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  5. PSME_00013530-RA

PSME_00013530-RA


Description : (at3g24000 : 368.0) Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G23330.1); Has 43197 Blast hits to 14383 proteins in 288 species: Archae - 1; Bacteria - 6; Metazoa - 112; Fungi - 144; Plants - 42273; Viruses - 0; Other Eukaryotes - 661 (source: NCBI BLink). & (q76c99|rf1_orysa : 101.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 670.0) & (original description: no original description)


Gene families : OG_42_0013901 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0013901_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00013530-RA
Cluster HCCA clusters: Cluster_210

Target Alias Description ECC score Gene Family Method Actions
PSME_00010832-RA No alias (at1g11290 : 654.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEP Predicted GO
MF GO:0003678 DNA helicase activity IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0032200 telomere organization IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:0060249 anatomical structure homeostasis IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 353 377
IPR002885 Pentatricopeptide_repeat 253 277
IPR002885 Pentatricopeptide_repeat 173 224
IPR002885 Pentatricopeptide_repeat 78 126
IPR002885 Pentatricopeptide_repeat 278 325
IPR002885 Pentatricopeptide_repeat 140 170
No external refs found!