Description : (at5g16750 : 186.0) Encodes a nucleolar localized WD-40 repeat protein that is preferentially expressed in dividing cells and is required for regulated division planes and embryo development.; TORMOZEMBRYO DEFECTIVE (TOZ); CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), Small-subunit processome, Utp13 (InterPro:IPR013934), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G49660.1); Has 153281 Blast hits to 38108 proteins in 953 species: Archae - 96; Bacteria - 13855; Metazoa - 64321; Fungi - 32637; Plants - 21715; Viruses - 0; Other Eukaryotes - 20657 (source: NCBI BLink). & (reliability: 372.0) & (original description: no original description)
Gene families : OG_42_0001305 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001305_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Pseudotsuga release: PSME_00013548-RA | |
Cluster | HCCA clusters: Cluster_131 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
PSME_00016747-RA | No alias | (at5g16750 : 165.0) Encodes a nucleolar localized WD-40... | 0.01 | Orthogroups_2024-Update | |
PSME_00028454-RA | No alias | (at5g16750 : 235.0) Encodes a nucleolar localized WD-40... | 0.01 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0006364 | rRNA processing | IEA | InterProScan predictions |
CC | GO:0032040 | small-subunit processome | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0005543 | phospholipid binding | IEP | Predicted GO |
MF | GO:0008289 | lipid binding | IEP | Predicted GO |
MF | GO:0008641 | ubiquitin-like modifier activating enzyme activity | IEP | Predicted GO |
MF | GO:0016874 | ligase activity | IEP | Predicted GO |
MF | GO:0016877 | ligase activity, forming carbon-sulfur bonds | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR013934 | SSU_processome_Utp13 | 73 | 221 |
No external refs found! |