1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00013854-RA

PSME_00013854-RA


Description : (at2g13600 : 421.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G22070.1); Has 46660 Blast hits to 13875 proteins in 226 species: Archae - 0; Bacteria - 4; Metazoa - 74; Fungi - 58; Plants - 45878; Viruses - 0; Other Eukaryotes - 646 (source: NCBI BLink). & (q76c99|rf1_orysa : 95.1) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 842.0) & (original description: no original description)


Gene families : OG_42_0012016 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0012016_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00013854-RA

Target Alias Description ECC score Gene Family Method Actions
125997 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Orthogroups_2024-Update
MA_56660g0010 No alias (at2g13600 : 517.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
PSME_00025181-RA No alias (at2g13600 : 519.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00039121-RA No alias (at1g11290 : 570.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 10 37
IPR002885 Pentatricopeptide_repeat 79 102
IPR002885 Pentatricopeptide_repeat 109 135
IPR002885 Pentatricopeptide_repeat 214 261
IPR002885 Pentatricopeptide_repeat 314 362
No external refs found!