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  5. PSME_00013986-RA

PSME_00013986-RA


Description : (at4g16730 : 247.0) In the Col ecotype, no functional protein is encoded at this locus due to the presence of a two-base (AT) insertion 184 nucleotides downstream of the start codon leading to a frame shift and premature translational termination. However, in the Ws ecotype, a functional terpene synthase that localizes to the chloroplast is encoded at this locus. It can catalyze the synthesis of (E)-beta-ocimene and (E,E)-alpha farnesene in vitro, but, it has more activity as an (E)-beta-ocimene synthase activity in vivo. This may reflect the greater availability of the GPP precursor of (E)-beta-ocimene than of the FPP precursor of (E,E)-alpha-farnesene in the chloroplasts where the Ws TPS02 is present.; terpene synthase 02 (TPS02); INVOLVED IN: metabolic process; EXPRESSED IN: sepal, carpel, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: terpene synthase 03 (TAIR:AT4G16740.1); Has 1736 Blast hits to 1706 proteins in 177 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 1730; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). & (p59287|cass_ricco : 228.0) Casbene synthase, chloroplast precursor (EC 4.2.3.8) - Ricinus communis (Castor bean) & (reliability: 494.0) & (original description: no original description)


Gene families : OG_42_0000258 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000258_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00013986-RA
Cluster HCCA clusters: Cluster_68

Target Alias Description ECC score Gene Family Method Actions
Brara.H00876.1 No alias EC_4.2 carbon-oxygen lyase &... 0.03 Orthogroups_2024-Update
Glyma.09G122500 No alias terpene synthase 03 0.04 Orthogroups_2024-Update
PSME_00003263-RA No alias (at4g02780 : 383.0) Catalyzes the conversion of... 0.05 Orthogroups_2024-Update
PSME_00010326-RA No alias (p59287|cass_ricco : 263.0) Casbene synthase,... 0.04 Orthogroups_2024-Update
PSME_00012312-RA No alias (p93665|dcs1_goshi : 216.0) (+)-delta-cadinene synthase... 0.05 Orthogroups_2024-Update
PSME_00013344-RA No alias (p93665|dcs1_goshi : 255.0) (+)-delta-cadinene synthase... 0.03 Orthogroups_2024-Update
PSME_00024100-RA No alias (at4g16740 : 219.0) Encodes an (E,E)-alpha-farnesene... 0.05 Orthogroups_2024-Update
PSME_00025006-RA No alias (at4g16730 : 150.0) In the Col ecotype, no functional... 0.06 Orthogroups_2024-Update
PSME_00025976-RA No alias (at4g02780 : 173.0) Catalyzes the conversion of... 0.04 Orthogroups_2024-Update
Solyc01g105960 No alias (E)-beta-ocimene synthase 0.02 Orthogroups_2024-Update
Sopen01g048290 No alias Terpene synthase family, metal binding domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEA InterProScan predictions
MF GO:0010333 terpene synthase activity IEA InterProScan predictions
MF GO:0016829 lyase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
CC GO:0005618 cell wall IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006790 sulfur compound metabolic process IEP Predicted GO
MF GO:0008430 selenium binding IEP Predicted GO
BP GO:0016226 iron-sulfur cluster assembly IEP Predicted GO
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predicted GO
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Predicted GO
CC GO:0030312 external encapsulating structure IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
BP GO:0031163 metallo-sulfur cluster assembly IEP Predicted GO
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Predicted GO
BP GO:0046486 glycerolipid metabolic process IEP Predicted GO
CC GO:0048046 apoplast IEP Predicted GO
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Predicted GO
InterPro domains Description Start Stop
IPR001906 Terpene_synth_N 76 270
IPR005630 Terpene_synthase_metal-bd 313 574
No external refs found!