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PSME_00014065-RA


Description : (at5g25560 : 451.0) CHY-type/CTCHY-type/RING-type Zinc finger protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CTCHY-type (InterPro:IPR017921), Zinc finger, CHY-type (InterPro:IPR008913), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: CHY-type/CTCHY-type/RING-type Zinc finger protein (TAIR:AT5G22920.1). & (reliability: 902.0) & (original description: no original description)


Gene families : OG_42_0001040 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001040_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00014065-RA
Cluster HCCA clusters: Cluster_94

Target Alias Description ECC score Gene Family Method Actions
Bradi2g48340 No alias CHY-type/CTCHY-type/RING-type Zinc finger protein 0.04 Orthogroups_2024-Update
Mp7g12840.1 No alias E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis... 0.01 Orthogroups_2024-Update
PSME_00018780-RA No alias (at5g25560 : 408.0) CHY-type/CTCHY-type/RING-type Zinc... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR008913 Znf_CHY 50 131
IPR039512 RCHY1_zinc-ribbon 233 291
IPR027370 Znf-RING_LisH 186 226
No external refs found!