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  5. PSME_00014106-RA

PSME_00014106-RA


Description : (at5g15450 : 850.0) Encodes a chloroplast-targeted Hsp101 homologue. Functions as a molecular chaperone involved in plastid differentiation mediating internal thylakoid membrane formation and conferring thermotolerance to chloroplasts during heat stress. APG6 is constitutively expressed in the root tips, the organ boundary region, the reproductive tissues of mature plants where plastids exist as proplastids, and slightly in the stems and leaves. APG6 expression is upregulated in response to heat shock in various organs, but not in response to other abiotic stresses. Apg6 mutants have a pale-green phenotype.; casein lytic proteinase B3 (CLPB3); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: chloroplast organization, response to heat; LOCATED IN: plastid stroma, chloroplast, chloroplast stroma; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA-type, core (InterPro:IPR003959), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpB (InterPro:IPR017730), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: casein lytic proteinase B4 (TAIR:AT2G25140.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q6f2y7|hs101_orysa : 581.0) Heat shock protein 101 - Oryza sativa (Rice) & (reliability: 1700.0) & (original description: no original description)


Gene families : OG_42_0000227 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000227_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00014106-RA
Cluster HCCA clusters: Cluster_97

Target Alias Description ECC score Gene Family Method Actions
439163 No alias CLPC homologue 1 0.02 Orthogroups_2024-Update
At5g15450 No alias Chaperone protein ClpB3, chloroplastic... 0.02 Orthogroups_2024-Update
Bradi3g44335 No alias CLPC homologue 1 0.06 Orthogroups_2024-Update
Bradi3g44341 No alias CLPC homologue 1 0.06 Orthogroups_2024-Update
Cre10.g465550 No alias Clp ATPase 0.03 Orthogroups_2024-Update
Cre11.g467575 No alias casein lytic proteinase B3 0.01 Orthogroups_2024-Update
Cre43.g760497 No alias CLPC homologue 1 0.04 Orthogroups_2024-Update
Glyma.05G201100 No alias CLPC homologue 1 0.03 Orthogroups_2024-Update
Glyma.08G008400 No alias CLPC homologue 1 0.03 Orthogroups_2024-Update
HORVU5Hr1G031470.8 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os03g31300 No alias chaperone protein clpB 1, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os05g44340 No alias heat shock protein 101, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os11g16590 No alias ATP-dependent Clp protease ATP-binding subunit clpA... 0.04 Orthogroups_2024-Update
MA_596288g0010 No alias (at5g50920 : 437.0) Encodes a protein that is similar to... 0.04 Orthogroups_2024-Update
MA_8117g0010 No alias (at5g50920 : 620.0) Encodes a protein that is similar to... 0.07 Orthogroups_2024-Update
Potri.012G105900 No alias CLPC homologue 1 0.02 Orthogroups_2024-Update
Potri.015G105100 No alias CLPC homologue 1 0.03 Orthogroups_2024-Update
Potri.017G090600 No alias casein lytic proteinase B3 0.05 Orthogroups_2024-Update
Pp1s62_161V6 No alias chaperone clpb expressed 0.03 Orthogroups_2024-Update
Pp1s81_51V6 No alias atpase aaa-2 domain protein 0.03 Orthogroups_2024-Update
Pp1s88_195V6 No alias atpase aaa-2 domain protein 0.02 Orthogroups_2024-Update
Seita.9G360800.1 No alias organellar chaperone *(Clp-p/Clp-m) 0.02 Orthogroups_2024-Update
Sopen02g033340 No alias AAA domain (Cdc48 subfamily) 0.03 Orthogroups_2024-Update
Sopen12g021150 No alias AAA domain (Cdc48 subfamily) 0.03 Orthogroups_2024-Update
evm.model.tig00000655.28 No alias (at5g50920 : 1134.0) Encodes a protein that is similar... 0.03 Orthogroups_2024-Update
evm.model.tig00001416.4 No alias (at5g15450 : 811.0) Encodes a chloroplast-targeted... 0.01 Orthogroups_2024-Update
evm.model.tig00020996.22 No alias (at5g15450 : 496.0) Encodes a chloroplast-targeted... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0004559 alpha-mannosidase activity IEP Predicted GO
MF GO:0004721 phosphoprotein phosphatase activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
MF GO:0004813 alanine-tRNA ligase activity IEP Predicted GO
BP GO:0006013 mannose metabolic process IEP Predicted GO
BP GO:0006082 organic acid metabolic process IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
BP GO:0006419 alanyl-tRNA aminoacylation IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006536 glutamate metabolic process IEP Predicted GO
BP GO:0006537 glutamate biosynthetic process IEP Predicted GO
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Predicted GO
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0008408 3'-5' exonuclease activity IEP Predicted GO
BP GO:0009064 glutamine family amino acid metabolic process IEP Predicted GO
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Predicted GO
MF GO:0015923 mannosidase activity IEP Predicted GO
MF GO:0015930 glutamate synthase activity IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016226 iron-sulfur cluster assembly IEP Predicted GO
BP GO:0016311 dephosphorylation IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
BP GO:0019752 carboxylic acid metabolic process IEP Predicted GO
MF GO:0019842 vitamin binding IEP Predicted GO
MF GO:0030976 thiamine pyrophosphate binding IEP Predicted GO
BP GO:0031163 metallo-sulfur cluster assembly IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
BP GO:0043436 oxoacid metabolic process IEP Predicted GO
BP GO:0043648 dicarboxylic acid metabolic process IEP Predicted GO
BP GO:0043650 dicarboxylic acid biosynthetic process IEP Predicted GO
BP GO:0044281 small molecule metabolic process IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
BP GO:0048193 Golgi vesicle transport IEP Predicted GO
MF GO:0051536 iron-sulfur cluster binding IEP Predicted GO
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Predicted GO
MF GO:0051540 metal cluster binding IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
MF GO:1901681 sulfur compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 17 116
IPR003959 ATPase_AAA_core 381 550
No external refs found!