1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00014319-RA

PSME_00014319-RA


Description : (at5g46040 : 619.0) Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport, response to nematode; LOCATED IN: membrane; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: peptide transporter 3 (TAIR:AT5G46050.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 1238.0) & (original description: no original description)


Gene families : OG_42_0000015 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000015_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00014319-RA
Cluster HCCA clusters: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
A4A49_11517 No alias protein nrt1 ptr family 5.6 0.02 Orthogroups_2024-Update
A4A49_23336 No alias protein nrt1 ptr family 7.3 0.02 Orthogroups_2024-Update
Bradi1g03500 No alias Major facilitator superfamily protein 0.02 Orthogroups_2024-Update
Brara.C04569.1 No alias anion transporter *(NRT1/PTR) 0.02 Orthogroups_2024-Update
HORVU1Hr1G054020.3 No alias anion transporter *(NRT1/PTR) 0.02 Orthogroups_2024-Update
LOC_Os04g50950 No alias peptide transporter PTR2, putative, expressed 0.03 Orthogroups_2024-Update
PSME_00012572-RA No alias (at3g54140 : 824.0) Encodes a di- and tri-peptide... 0.03 Orthogroups_2024-Update
PSME_00044025-RA No alias (at2g37900 : 373.0) Major facilitator superfamily... 0.02 Orthogroups_2024-Update
Potri.002G029200 No alias peptide transporter 1 0.03 Orthogroups_2024-Update
Potri.008G061100 No alias Major facilitator superfamily protein 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA InterProScan predictions
MF GO:0022857 transmembrane transporter activity IEA InterProScan predictions
BP GO:0055085 transmembrane transport IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003917 DNA topoisomerase type I activity IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0004888 transmembrane signaling receptor activity IEP Predicted GO
MF GO:0004970 ionotropic glutamate receptor activity IEP Predicted GO
MF GO:0005216 ion channel activity IEP Predicted GO
MF GO:0005230 extracellular ligand-gated ion channel activity IEP Predicted GO
MF GO:0005516 calmodulin binding IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0008066 glutamate receptor activity IEP Predicted GO
MF GO:0015276 ligand-gated ion channel activity IEP Predicted GO
MF GO:0022824 transmitter-gated ion channel activity IEP Predicted GO
MF GO:0022834 ligand-gated channel activity IEP Predicted GO
MF GO:0022835 transmitter-gated channel activity IEP Predicted GO
MF GO:0022836 gated channel activity IEP Predicted GO
MF GO:0022838 substrate-specific channel activity IEP Predicted GO
MF GO:0022839 ion gated channel activity IEP Predicted GO
MF GO:0030594 neurotransmitter receptor activity IEP Predicted GO
MF GO:0038023 signaling receptor activity IEP Predicted GO
MF GO:0060089 molecular transducer activity IEP Predicted GO
InterPro domains Description Start Stop
IPR000109 POT_fam 103 531
No external refs found!