1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00014384-RA

PSME_00014384-RA


Description : (at5g21960 : 93.6) encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.; Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G19210.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 187.2) & (original description: no original description)


Gene families : OG_42_0000000 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00014384-RA
Cluster HCCA clusters: Cluster_32

Target Alias Description ECC score Gene Family Method Actions
A4A49_03112 No alias ethylene-responsive transcription factor crf4 0.04 Orthogroups_2024-Update
A4A49_08495 No alias ethylene-responsive transcription factor 3 0.02 Orthogroups_2024-Update
A4A49_20188 No alias ethylene-responsive transcription factor erf062 0.04 Orthogroups_2024-Update
A4A49_24642 No alias ethylene-responsive transcription factor rap2-11 0.02 Orthogroups_2024-Update
A4A49_28100 No alias ethylene-responsive transcription factor erf017 0.02 Orthogroups_2024-Update
A4A49_28228 No alias ethylene-responsive transcription factor erf017 0.02 Orthogroups_2024-Update
A4A49_30015 No alias ethylene-responsive transcription factor erf019 0.02 Orthogroups_2024-Update
A4A49_33000 No alias ethylene-responsive transcription factor 14 0.04 Orthogroups_2024-Update
A4A49_35008 No alias dehydration-responsive element-binding protein 3 0.02 Orthogroups_2024-Update
A4A49_35180 No alias ethylene-responsive transcription factor 1b 0.02 Orthogroups_2024-Update
A4A49_38622 No alias dehydration-responsive element-binding protein 3 0.02 Orthogroups_2024-Update
A4A49_40092 No alias ethylene-responsive transcription factor crf2 0.03 Orthogroups_2024-Update
A4A49_40581 No alias ethylene-responsive transcription factor erf106 0.02 Orthogroups_2024-Update
A4A49_42088 No alias ethylene-responsive transcription factor 13 0.03 Orthogroups_2024-Update
A4A49_42290 No alias ethylene-responsive transcription factor rap2-4 0.02 Orthogroups_2024-Update
At1g22190 No alias Ethylene-responsive transcription factor RAP2-13... 0.02 Orthogroups_2024-Update
At1g74930 No alias Ethylene-responsive transcription factor ERF018... 0.02 Orthogroups_2024-Update
At1g75490 No alias Dehydration-responsive element-binding protein 2D... 0.02 Orthogroups_2024-Update
At4g17500 No alias Ethylene-responsive transcription factor 1A... 0.04 Orthogroups_2024-Update
At5g25190 No alias Ethylene-responsive transcription factor ERF003... 0.03 Orthogroups_2024-Update
Bradi3g24000 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Bradi5g17620 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Bradi5g17640 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Brara.A00159.1 No alias subgroup ERF-II-DEAR transcription factor 0.02 Orthogroups_2024-Update
Brara.A00511.1 No alias subgroup ERF-III transcription factor 0.03 Orthogroups_2024-Update
Brara.C01524.1 No alias transcription factor *(CBF/DREB1) & subgroup ERF-III... 0.03 Orthogroups_2024-Update
Brara.D00707.1 No alias subgroup ERF-I transcription factor 0.04 Orthogroups_2024-Update
Brara.E00692.1 No alias subgroup ERF-IV/DREB2 transcription factor 0.02 Orthogroups_2024-Update
Brara.H01496.1 No alias subgroup ERF-I transcription factor 0.03 Orthogroups_2024-Update
Brara.H01777.1 No alias subgroup ERF-I transcription factor 0.02 Orthogroups_2024-Update
Brara.I04678.1 No alias subgroup ERF-I transcription factor 0.03 Orthogroups_2024-Update
GRMZM2G057386 No alias ethylene responsive element binding factor 5 0.03 Orthogroups_2024-Update
GRMZM2G066158 No alias ERF domain protein 12 0.02 Orthogroups_2024-Update
GRMZM2G169382 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G175543 No alias ethylene responsive element binding factor 4 0.02 Orthogroups_2024-Update
GRMZM2G421033 No alias DREB and EAR motif protein 3 0.02 Orthogroups_2024-Update
Glyma.03G255500 No alias cytokinin response factor 4 0.03 Orthogroups_2024-Update
Glyma.07G114000 No alias ethylene-responsive element binding factor 13 0.04 Orthogroups_2024-Update
Glyma.18G252300 No alias ethylene-responsive element binding factor 13 0.03 Orthogroups_2024-Update
Glyma.19G164100 No alias ethylene response factor 1 0.04 Orthogroups_2024-Update
Glyma.20G115300 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
HORVU4Hr1G015350.1 No alias subgroup ERF-III transcription factor 0.03 Orthogroups_2024-Update
LOC_Os02g45420 No alias AP2 domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os09g39810 No alias AP2 domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os12g41060 No alias AP2 domain containing protein, expressed 0.02 Orthogroups_2024-Update
MA_10430850g0010 No alias (at1g19210 : 114.0) encodes a member of the DREB... 0.04 Orthogroups_2024-Update
MA_10433310g0010 No alias (at5g11590 : 108.0) encodes a member of the DREB... 0.07 Orthogroups_2024-Update
MA_116185g0010 No alias (at5g61600 : 90.9) encodes a member of the ERF (ethylene... 0.03 Orthogroups_2024-Update
MA_164803g0010 No alias (at5g11590 : 119.0) encodes a member of the DREB... 0.03 Orthogroups_2024-Update
MA_166248g0010 No alias (at4g17500 : 138.0) Encodes a member of the ERF... 0.03 Orthogroups_2024-Update
MA_203191g0010 No alias (at1g28360 : 85.9) encodes a member of the ERF (ethylene... 0.03 Orthogroups_2024-Update
MA_426919g0010 No alias (at1g19210 : 109.0) encodes a member of the DREB... 0.03 Orthogroups_2024-Update
MA_426919g0020 No alias (at1g19210 : 104.0) encodes a member of the DREB... 0.03 Orthogroups_2024-Update
MA_69434g0020 No alias (q40479|erf2_tobac : 84.0) Ethylene-responsive... 0.03 Orthogroups_2024-Update
MA_71018g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
MA_81029g0010 No alias (q9sxs8|erf3_tobac : 95.1) Ethylene-responsive... 0.04 Orthogroups_2024-Update
MA_891091g0010 No alias (at4g17500 : 92.0) Encodes a member of the ERF (ethylene... 0.03 Orthogroups_2024-Update
MA_922309g0010 No alias (at4g17500 : 92.0) Encodes a member of the ERF (ethylene... 0.03 Orthogroups_2024-Update
MA_938274g0010 No alias (at4g17500 : 97.8) Encodes a member of the ERF (ethylene... 0.03 Orthogroups_2024-Update
MA_959784g0010 No alias (at1g19210 : 119.0) encodes a member of the DREB... 0.03 Orthogroups_2024-Update
MA_96512g0020 No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
Mp1g20040.1 No alias transcription factor (ERF) 0.02 Orthogroups_2024-Update
PSME_00005185-RA No alias (at4g17500 : 105.0) Encodes a member of the ERF... 0.04 Orthogroups_2024-Update
PSME_00005186-RA No alias (at4g17500 : 141.0) Encodes a member of the ERF... 0.06 Orthogroups_2024-Update
PSME_00005187-RA No alias (at4g17500 : 144.0) Encodes a member of the ERF... 0.05 Orthogroups_2024-Update
PSME_00046052-RA No alias (at1g19210 : 89.0) encodes a member of the DREB... 0.03 Orthogroups_2024-Update
PSME_00056380-RA No alias (at4g17500 : 89.7) Encodes a member of the ERF (ethylene... 0.03 Orthogroups_2024-Update
Potri.001G154200 No alias ethylene responsive element binding factor 5 0.03 Orthogroups_2024-Update
Potri.003G121200 No alias Integrase-type DNA-binding superfamily protein 0.04 Orthogroups_2024-Update
Potri.003G220200 No alias related to AP2 11 0.02 Orthogroups_2024-Update
Potri.006G218200 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Potri.009G101900 No alias redox responsive transcription factor 1 0.03 Orthogroups_2024-Update
Potri.011G056900 No alias ERF domain protein 12 0.03 Orthogroups_2024-Update
Potri.012G134100 No alias C-repeat-binding factor 4 0.03 Orthogroups_2024-Update
Potri.014G046800 No alias ethylene-responsive element binding factor 13 0.02 Orthogroups_2024-Update
Potri.015G023200 No alias cytokinin response factor 4 0.02 Orthogroups_2024-Update
Potri.017G087800 No alias related to AP2 11 0.03 Orthogroups_2024-Update
Potri.019G067400 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Potri.T050600 No alias ethylene response factor 1 0.02 Orthogroups_2024-Update
Seita.1G257300.1 No alias subgroup ERF-IX transcription factor 0.02 Orthogroups_2024-Update
Seita.2G156100.1 No alias subgroup ERF-IX transcription factor 0.03 Orthogroups_2024-Update
Seita.2G156200.1 No alias subgroup ERF-IX transcription factor 0.03 Orthogroups_2024-Update
Seita.2G276200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.3G192000.1 No alias subgroup ERF-VIII transcription factor 0.03 Orthogroups_2024-Update
Seita.4G039700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.7G290600.1 No alias subgroup ERF-X transcription factor 0.03 Orthogroups_2024-Update
Seita.8G012200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.9G268700.1 No alias subgroup ERF-I transcription factor 0.03 Orthogroups_2024-Update
Seita.9G320700.1 No alias subgroup ERF-IX transcription factor 0.03 Orthogroups_2024-Update
Seita.9G516800.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Sobic.001G296300.1 No alias subgroup ERF-IX transcription factor 0.03 Orthogroups_2024-Update
Sobic.001G428700.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.002G225700.1 No alias subgroup ERF-X transcription factor 0.03 Orthogroups_2024-Update
Sobic.002G269100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.003G297600.1 No alias subgroup ERF-IX transcription factor 0.03 Orthogroups_2024-Update
Sobic.003G442100.1 No alias subgroup ERF-III transcription factor 0.03 Orthogroups_2024-Update
Sobic.004G084600.1 No alias cutin and suberin biosynthesis transcription factor... 0.04 Orthogroups_2024-Update
Sobic.004G283201.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G308900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.005G103100.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.006G184800.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.006G259000.1 No alias subgroup ERF-VIII transcription factor 0.04 Orthogroups_2024-Update
Sobic.007G124100.1 No alias subgroup ERF-I transcription factor 0.03 Orthogroups_2024-Update
Sobic.007G156700.1 No alias subgroup ERF-X transcription factor 0.03 Orthogroups_2024-Update
Sobic.009G170800.1 No alias subgroup ERF-IV/DREB2 transcription factor 0.03 Orthogroups_2024-Update
Sobic.010G016500.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc01g095500 No alias Sl Cytokinin Response Factor 5 0.03 Orthogroups_2024-Update
Solyc02g077370 No alias Ethylene Response Factor C.5 0.03 Orthogroups_2024-Update
Solyc02g093130 No alias AP2/EREBP transcription factor_1 0.04 Orthogroups_2024-Update
Solyc03g093530 No alias ethylene-responsive transcription factor (AHRD V3.3 *-*... 0.03 Orthogroups_2024-Update
Solyc06g068830 No alias Ethylene-responsive transcription factor (AHRD V3.3 *-*... 0.02 Orthogroups_2024-Update
Solyc11g011750 No alias Ethylene-responsive transcription factor (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Sopen02g033000 No alias AP2 domain 0.04 Orthogroups_2024-Update
Sopen02g035400 No alias AP2 domain 0.03 Orthogroups_2024-Update
Sopen02g037700 No alias AP2 domain 0.02 Orthogroups_2024-Update
Sopen03g033540 No alias AP2 domain 0.03 Orthogroups_2024-Update
Sopen04g006680 No alias AP2 domain 0.03 Orthogroups_2024-Update
Sopen05g030600 No alias AP2 domain 0.02 Orthogroups_2024-Update
Sopen06g033990 No alias AP2 domain 0.03 Orthogroups_2024-Update
Sopen10g028020 No alias AP2 domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA InterProScan predictions
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004014 adenosylmethionine decarboxylase activity IEP Predicted GO
BP GO:0006576 cellular biogenic amine metabolic process IEP Predicted GO
BP GO:0006595 polyamine metabolic process IEP Predicted GO
BP GO:0006596 polyamine biosynthetic process IEP Predicted GO
BP GO:0006597 spermine biosynthetic process IEP Predicted GO
BP GO:0008215 spermine metabolic process IEP Predicted GO
BP GO:0008216 spermidine metabolic process IEP Predicted GO
BP GO:0008295 spermidine biosynthetic process IEP Predicted GO
BP GO:0009308 amine metabolic process IEP Predicted GO
BP GO:0009309 amine biosynthetic process IEP Predicted GO
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Predicted GO
BP GO:0042401 cellular biogenic amine biosynthetic process IEP Predicted GO
BP GO:0044106 cellular amine metabolic process IEP Predicted GO
BP GO:0097164 ammonium ion metabolic process IEP Predicted GO
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Predicted GO
InterPro domains Description Start Stop
IPR001471 AP2/ERF_dom 27 75
No external refs found!