1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00014449-RA

PSME_00014449-RA


Description : (at5g60020 : 734.0) putative laccase, a member of laccase family of genes (17 members in Arabidopsis).; laccase 17 (LAC17); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase 2 (TAIR:AT2G29130.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p14133|aso_cucsa : 237.0) L-ascorbate oxidase precursor (EC 1.10.3.3) (Ascorbase) (ASO) - Cucumis sativus (Cucumber) & (reliability: 1468.0) & (original description: no original description)


Gene families : OG_42_0000051 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000051_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00014449-RA
Cluster HCCA clusters: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
A4A49_64623 No alias laccase-5 0.04 Orthogroups_2024-Update
Bradi2g23350 No alias laccase 17 0.06 Orthogroups_2024-Update
Glyma.02G224800 No alias Laccase/Diphenol oxidase family protein 0.04 Orthogroups_2024-Update
Glyma.12G121700 No alias Laccase/Diphenol oxidase family protein 0.04 Orthogroups_2024-Update
Glyma.18G177200 No alias laccase 17 0.03 Orthogroups_2024-Update
Glyma.18G177300 No alias laccase 17 0.04 Orthogroups_2024-Update
MA_57140g0020 No alias (at5g05390 : 788.0) putative laccase, a member of... 0.02 Orthogroups_2024-Update
PSME_00001502-RA No alias (at2g38080 : 615.0) Encodes a protein with similarity to... 0.03 Orthogroups_2024-Update
PSME_00015371-RA No alias (at5g05390 : 674.0) putative laccase, a member of... 0.05 Orthogroups_2024-Update
PSME_00018932-RA No alias (at5g05390 : 800.0) putative laccase, a member of... 0.05 Orthogroups_2024-Update
PSME_00030935-RA No alias (at5g05390 : 627.0) putative laccase, a member of... 0.03 Orthogroups_2024-Update
PSME_00035589-RA No alias (at5g05390 : 699.0) putative laccase, a member of... 0.03 Orthogroups_2024-Update
PSME_00039922-RA No alias (at5g60020 : 722.0) putative laccase, a member of... 0.02 Orthogroups_2024-Update
PSME_00042485-RA No alias (at5g05390 : 782.0) putative laccase, a member of... 0.02 Orthogroups_2024-Update
Pp1s175_122V6 No alias laccase 90a 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEA InterProScan predictions
MF GO:0016491 oxidoreductase activity IEA InterProScan predictions
BP GO:0055114 oxidation-reduction process IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006275 regulation of DNA replication IEP Predicted GO
BP GO:0008156 negative regulation of DNA replication IEP Predicted GO
BP GO:0009116 nucleoside metabolic process IEP Predicted GO
BP GO:0009119 ribonucleoside metabolic process IEP Predicted GO
BP GO:0009890 negative regulation of biosynthetic process IEP Predicted GO
BP GO:0009892 negative regulation of metabolic process IEP Predicted GO
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0015969 guanosine tetraphosphate metabolic process IEP Predicted GO
BP GO:0031324 negative regulation of cellular metabolic process IEP Predicted GO
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Predicted GO
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Predicted GO
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Predicted GO
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP Predicted GO
BP GO:0042278 purine nucleoside metabolic process IEP Predicted GO
BP GO:0045005 DNA-dependent DNA replication maintenance of fidelity IEP Predicted GO
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0046128 purine ribonucleoside metabolic process IEP Predicted GO
BP GO:0048478 replication fork protection IEP Predicted GO
BP GO:0048519 negative regulation of biological process IEP Predicted GO
BP GO:0048523 negative regulation of cellular process IEP Predicted GO
BP GO:0051052 regulation of DNA metabolic process IEP Predicted GO
BP GO:0051053 negative regulation of DNA metabolic process IEP Predicted GO
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0090329 regulation of DNA-dependent DNA replication IEP Predicted GO
BP GO:1901068 guanosine-containing compound metabolic process IEP Predicted GO
BP GO:1901657 glycosyl compound metabolic process IEP Predicted GO
BP GO:2000104 negative regulation of DNA-dependent DNA replication IEP Predicted GO
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001117 Cu-oxidase 156 268
IPR011706 Cu-oxidase_2 381 512
IPR011707 Cu-oxidase_3 15 126
No external refs found!