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  5. PSME_00014491-RA

PSME_00014491-RA


Description : (at5g53950 : 231.0) Transcriptional activator of the NAC gene family, with CUC1 redundantly required for embryonic apical meristem formation, cotyledon separation and expression of STM. Proper timing of CUC2 expression is required to maintain the phyllotactic pattern initiated in the meristem. CUC2 expression in leaf sinus region is required for serration and the extent of serration is modulated by mir164A mediated repression of CUC2.; CUP-SHAPED COTYLEDON 2 (CUC2); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (TAIR:AT3G15170.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q5cd17|nac77_orysa : 199.0) NAC domain-containing protein 77 (ONAC077) (ONAC300) - Oryza sativa (Rice) & (reliability: 426.0) & (original description: no original description)


Gene families : OG_42_0000017 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000017_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00014491-RA
Cluster HCCA clusters: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
A4A49_19256 No alias nac domain-containing protein 89 0.05 Orthogroups_2024-Update
A4A49_24132 No alias nac domain-containing protein 78 0.03 Orthogroups_2024-Update
Brara.B01408.1 No alias NAC-type transcription factor 0.02 Orthogroups_2024-Update
Brara.E03469.1 No alias NAC-type transcription factor 0.03 Orthogroups_2024-Update
Brara.F02288.1 No alias NAC-type transcription factor 0.03 Orthogroups_2024-Update
Glyma.12G161700 No alias NAC (No Apical Meristem) domain transcriptional... 0.03 Orthogroups_2024-Update
PSME_00030678-RA No alias (at1g65910 : 262.0) NAC domain containing protein 28... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR003441 NAC-dom 37 163
No external refs found!