- Home
- Species
- Pseudotsuga menziesii
- Sequence
- PSME_00014545-RA
PSME_00014545-RA
Description : (at3g53230 : 211.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (p54774|cdc48_soybn : 207.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 422.0) & (original description: no original description)
Expression Profile
Attention: This gene has low abundance.
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Co-expression Networks
Type | Description | Actions |
Neighborhood | Pseudotsuga release: PSME_00014545-RA | |
Cluster | HCCA clusters: Cluster_49 | |
Expression Context Conservation (ECC)
Target | Alias | Description | ECC score | Gene Family Method | Actions |
PSME_00007395-RA | No alias | (at3g53230 : 449.0) ATPase, AAA-type, CDC48 protein;... | 0.02 | Orthogroups_2024-Update | |
PSME_00012630-RA | No alias | (at3g53230 : 531.0) ATPase, AAA-type, CDC48 protein;... | 0.04 | Orthogroups_2024-Update | |
Functional Annotation
Type | GO Term | Name | Evidence | Source |
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
MF | GO:0000287 | magnesium ion binding | IEP | Predicted GO |
MF | GO:0004345 | glucose-6-phosphate dehydrogenase activity | IEP | Predicted GO |
MF | GO:0010333 | terpene synthase activity | IEP | Predicted GO |
MF | GO:0016829 | lyase activity | IEP | Predicted GO |
MF | GO:0016835 | carbon-oxygen lyase activity | IEP | Predicted GO |
MF | GO:0016838 | carbon-oxygen lyase activity, acting on phosphates | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
IPR015415 | Vps4_C | 193 | 232 |