Solyc02g068890

Description : Pentatricopeptide repeat superfamily protein (AHRD V3.3 *** A0A061GDR6_THECC)

Gene families : OG_42_0010070 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0010070_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Solyc02g068890
Cluster	HCCA clusters: Cluster_141

Target	Alias	Description	ECC score	Gene Family Method
Bradi4g14010	No alias	Pentatricopeptide repeat (PPR-like) superfamily protein	0.05	Orthogroups_2024-Update
PSME_00046133-RA	No alias	(at4g19890 : 526.0) Pentatricopeptide repeat (PPR-like)...	0.05	Orthogroups_2024-Update
Sobic.005G182300.2	No alias	Unknown function	0.04	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
No GO annotation available for this sequence

Type	GO Term	Name	Evidence	Source
BP	GO:0006486	protein glycosylation	IEP	Predicted GO
MF	GO:0008378	galactosyltransferase activity	IEP	Predicted GO
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	Predicted GO
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	Predicted GO
MF	GO:0030246	carbohydrate binding	IEP	Predicted GO
BP	GO:0043413	macromolecule glycosylation	IEP	Predicted GO
MF	GO:0051287	NAD binding	IEP	Predicted GO
BP	GO:0070085	glycosylation	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	432	462
IPR002885	Pentatricopeptide_repeat	264	293
IPR002885	Pentatricopeptide_repeat	230	258
IPR002885	Pentatricopeptide_repeat	162	188
IPR002885	Pentatricopeptide_repeat	195	223
IPR002885	Pentatricopeptide_repeat	366	415
IPR002885	Pentatricopeptide_repeat	545	590
IPR002885	Pentatricopeptide_repeat	471	520
IPR002885	Pentatricopeptide_repeat	295	344

External Links

No external refs found!