1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00014610-RA

PSME_00014610-RA


Description : (at2g21860 : 610.0) violaxanthin de-epoxidase-related; BEST Arabidopsis thaliana protein match is: non-photochemical quenching 1 (TAIR:AT1G08550.2); Has 151 Blast hits to 151 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 126; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). & (reliability: 1220.0) & (original description: no original description)


Gene families : OG_42_0007611 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007611_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00014610-RA
Cluster HCCA clusters: Cluster_245

Target Alias Description ECC score Gene Family Method Actions
HORVU3Hr1G067770.1 No alias Unknown function 0.03 Orthogroups_2024-Update
MA_89112g0010 No alias (at2g21860 : 558.0) violaxanthin de-epoxidase-related;... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0009507 chloroplast IEA InterProScan predictions
MF GO:0046422 violaxanthin de-epoxidase activity IEA InterProScan predictions
BP GO:0055114 oxidation-reduction process IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006720 isoprenoid metabolic process IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0008299 isoprenoid biosynthetic process IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
InterPro domains Description Start Stop
IPR010788 VDE 271 522
No external refs found!