Sopen05g026780

Description : Integrase core domain

Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen05g026780

Target	Alias	Description	ECC score	Gene Family Method
LOC_Os02g32230	No alias	retrotransposon protein, putative, unclassified, expressed	0.01	Orthogroups_2024-Update
Solyc08g061440	No alias	No description available	0.04	Orthogroups_2024-Update
Sopen00g001490	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.05	Orthogroups_2024-Update
Sopen00g001810	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.01	Orthogroups_2024-Update
Sopen01g025330	No alias	Integrase core domain	0.02	Orthogroups_2024-Update
Sopen01g025930	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.02	Orthogroups_2024-Update
Sopen01g026660	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen02g005710	No alias	Retroviral aspartyl protease	0.02	Orthogroups_2024-Update
Sopen02g012390	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.02	Orthogroups_2024-Update
Sopen02g028910	No alias	Integrase core domain	0.01	Orthogroups_2024-Update
Sopen05g011340	No alias	Integrase core domain	0.03	Orthogroups_2024-Update
Sopen07g004430	No alias	gag-polypeptide of LTR copia-type	0.02	Orthogroups_2024-Update
Sopen07g004930	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.06	Orthogroups_2024-Update
Sopen08g007650	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.02	Orthogroups_2024-Update
Sopen08g020120	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen09g008850	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.04	Orthogroups_2024-Update
Sopen11g012620	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.06	Orthogroups_2024-Update
Sopen12g019980	No alias	Integrase core domain	0.02	Orthogroups_2024-Update
Sopen12g027580	No alias	Chromo (CHRromatin Organisation MOdifier) domain	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	InterProScan predictions
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000477	RT_dom	881	1043
IPR001584	Integrase_cat-core	1354	1462

External Links

No external refs found!

Sopen05g026780

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation