1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00014660-RA

PSME_00014660-RA


Description : (at2g16910 : 101.0) Encodes a basic helix-loop helix transcription factor involved in tapetal cell development. Loss of function mutations are male sterile. AMS binds to a region termed the E box of target gene promoters.; ABORTED MICROSPORES (AMS); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: tapetal layer development, regulation of transcription, pollen development; LOCATED IN: nucleus; EXPRESSED IN: petal, leaf whorl, sepal, flower, seed; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT3G26744.4); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 202.0) & (original description: no original description)


Gene families : OG_42_0000609 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000609_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00014660-RA
Cluster HCCA clusters: Cluster_116

Target Alias Description ECC score Gene Family Method Actions
Bradi5g01900 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Brara.C02411.1 No alias transcriptional regulator *(FIT) of iron homeostasis &... 0.03 Orthogroups_2024-Update
Brara.G01353.1 No alias transcriptional regulator *(FIT) of iron homeostasis &... 0.03 Orthogroups_2024-Update
Brara.K00863.1 No alias bHLH-type transcription factor 0.02 Orthogroups_2024-Update
GRMZM2G042895 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.05 Orthogroups_2024-Update
HORVU2Hr1G066090.2 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os04g23550 No alias basic helix-loop-helix family protein, putative, expressed 0.03 Orthogroups_2024-Update
MA_10427394g0020 No alias (at2g16910 : 81.6) Encodes a basic helix-loop helix... 0.05 Orthogroups_2024-Update
MA_10431722g0010 No alias (at2g16910 : 96.7) Encodes a basic helix-loop helix... 0.07 Orthogroups_2024-Update
MA_10431811g0010 No alias (at2g16910 : 117.0) Encodes a basic helix-loop helix... 0.06 Orthogroups_2024-Update
MA_16489g0010 No alias (at5g57150 : 91.7) basic helix-loop-helix (bHLH)... 0.03 Orthogroups_2024-Update
MA_196213g0010 No alias no hits & (original description: no original description) 0.06 Orthogroups_2024-Update
MA_196775g0010 No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
MA_28638g0010 No alias (at4g29930 : 87.0) basic helix-loop-helix (bHLH)... 0.03 Orthogroups_2024-Update
MA_4395g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
PSME_00012853-RA No alias (at2g16910 : 88.2) Encodes a basic helix-loop helix... 0.03 Orthogroups_2024-Update
Seita.7G045100.1 No alias bHLH-type transcription factor 0.03 Orthogroups_2024-Update
Solyc05g014590 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily... 0.03 Orthogroups_2024-Update
Sopen06g017530 No alias Helix-loop-helix DNA-binding domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Predicted GO
MF GO:0005215 transporter activity IEP Predicted GO
BP GO:0006629 lipid metabolic process IEP Predicted GO
BP GO:0006720 isoprenoid metabolic process IEP Predicted GO
BP GO:0006721 terpenoid metabolic process IEP Predicted GO
BP GO:0008299 isoprenoid biosynthetic process IEP Predicted GO
BP GO:0008610 lipid biosynthetic process IEP Predicted GO
MF GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity IEP Predicted GO
MF GO:0010333 terpene synthase activity IEP Predicted GO
MF GO:0015399 primary active transmembrane transporter activity IEP Predicted GO
MF GO:0015405 P-P-bond-hydrolysis-driven transmembrane transporter activity IEP Predicted GO
CC GO:0016021 integral component of membrane IEP Predicted GO
BP GO:0016114 terpenoid biosynthetic process IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Predicted GO
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Predicted GO
MF GO:0016744 transferase activity, transferring aldehyde or ketonic groups IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
MF GO:0022804 active transmembrane transporter activity IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
CC GO:0031224 intrinsic component of membrane IEP Predicted GO
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Predicted GO
MF GO:0042623 ATPase activity, coupled IEP Predicted GO
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEP Predicted GO
MF GO:0043492 ATPase activity, coupled to movement of substances IEP Predicted GO
BP GO:0044255 cellular lipid metabolic process IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
MF GO:0051213 dioxygenase activity IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Predicted GO
InterPro domains Description Start Stop
IPR011598 bHLH_dom 60 103
No external refs found!