1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00014736-RA

PSME_00014736-RA


Description : (at3g04610 : 140.0) flowering locus KH domain (FLK); FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: positive regulation of flower development; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT4G26000.1); Has 8156 Blast hits to 5360 proteins in 381 species: Archae - 0; Bacteria - 269; Metazoa - 3587; Fungi - 776; Plants - 1209; Viruses - 216; Other Eukaryotes - 2099 (source: NCBI BLink). & (reliability: 280.0) & (original description: no original description)


Gene families : OG_42_0000691 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000691_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00014736-RA

Target Alias Description ECC score Gene Family Method Actions
Brara.A01595.1 No alias regulatory protein *(PEP) of autonomous floral-promotion pathway 0.03 Orthogroups_2024-Update
Mp7g17380.1 No alias Flowering locus K homology domain OS=Arabidopsis... 0.01 Orthogroups_2024-Update
PSME_00034393-RA No alias (at3g04610 : 102.0) flowering locus KH domain (FLK);... 0.03 Orthogroups_2024-Update
PSME_00040942-RA No alias (at4g26000 : 130.0) Encodes a novel Arabidopsis gene... 0.05 Orthogroups_2024-Update
PSME_00052310-RA No alias (at3g04610 : 124.0) flowering locus KH domain (FLK);... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP Predicted GO
MF GO:0004519 endonuclease activity IEP Predicted GO
MF GO:0004521 endoribonuclease activity IEP Predicted GO
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Predicted GO
MF GO:0004540 ribonuclease activity IEP Predicted GO
BP GO:0009772 photosynthetic electron transport in photosystem II IEP Predicted GO
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Predicted GO
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Predicted GO
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Predicted GO
MF GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEP Predicted GO
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP Predicted GO
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 84 144
No external refs found!