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  5. PSME_00015058-RA

PSME_00015058-RA


Description : (at1g11290 : 635.0) Pentatricopeptide Repeat Protein containing the DYW motif. Required for editing of multiple plastid transcripts. Endonuclease activity.; CHLORORESPIRATORY REDUCTION22 (CRR22); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G57430.1); Has 48258 Blast hits to 14436 proteins in 289 species: Archae - 1; Bacteria - 2; Metazoa - 166; Fungi - 164; Plants - 47192; Viruses - 0; Other Eukaryotes - 733 (source: NCBI BLink). & (q76c99|rf1_orysa : 102.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1270.0) & (original description: no original description)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00015058-RA
Cluster HCCA clusters: Cluster_254

Target Alias Description ECC score Gene Family Method Actions
108969 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
129973 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 Orthogroups_2024-Update
34426 No alias pentatricopeptide (PPR) repeat-containing protein 0.05 Orthogroups_2024-Update
42377 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update
82859 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Bradi1g36900 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.04 Orthogroups_2024-Update
Bradi1g45097 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi4g37500 No alias SLOW GROWTH 1 0.06 Orthogroups_2024-Update
MA_183278g0010 No alias (at3g12770 : 619.0) Encodes a pentatricopeptide repeat... 0.07 Orthogroups_2024-Update
MA_96662g0010 No alias (at3g03580 : 553.0) Tetratricopeptide repeat (TPR)-like... 0.05 Orthogroups_2024-Update
PSME_00011804-RA No alias (at3g13770 : 548.0) Pentatricopeptide repeat (PPR)... 0.06 Orthogroups_2024-Update
PSME_00036495-RA No alias (at1g11290 : 559.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
Sobic.003G356100.1 No alias RNA editing factor *(CRR2) 0.02 Orthogroups_2024-Update
Sopen08g010500 No alias PPR repeat 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004497 monooxygenase activity IEP Predicted GO
MF GO:0004506 squalene monooxygenase activity IEP Predicted GO
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 178 221
IPR002885 Pentatricopeptide_repeat 294 320
IPR002885 Pentatricopeptide_repeat 499 522
IPR002885 Pentatricopeptide_repeat 424 471
IPR002885 Pentatricopeptide_repeat 323 370
IPR002885 Pentatricopeptide_repeat 121 168
IPR002885 Pentatricopeptide_repeat 222 268
IPR032867 DYW_dom 597 721
No external refs found!