PSME_00015362-RA


Description : (at4g36860 : 290.0) LIM domain-containing protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781), Ubiquitin interacting motif (InterPro:IPR003903), Protein of unknown function DUF3633 (InterPro:IPR022087); BEST Arabidopsis thaliana protein match is: DA1 (TAIR:AT1G19270.1); Has 6004 Blast hits to 4271 proteins in 323 species: Archae - 7; Bacteria - 228; Metazoa - 4096; Fungi - 190; Plants - 320; Viruses - 67; Other Eukaryotes - 1096 (source: NCBI BLink). & (reliability: 578.0) & (original description: no original description)


Gene families : OG_42_0000650 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000650_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00015362-RA
Cluster HCCA clusters: Cluster_15

Target Alias Description ECC score Gene Family Method Actions
PSME_00003680-RA No alias (at4g36860 : 256.0) LIM domain-containing protein;... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity IEP Predicted GO
MF GO:0004298 threonine-type endopeptidase activity IEP Predicted GO
CC GO:0005839 proteasome core complex IEP Predicted GO
BP GO:0006694 steroid biosynthetic process IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
BP GO:0008202 steroid metabolic process IEP Predicted GO
MF GO:0016229 steroid dehydrogenase activity IEP Predicted GO
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
MF GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
MF GO:0070003 threonine-type peptidase activity IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR022087 DA1-like 257 323
IPR001781 Znf_LIM 108 161
No external refs found!