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  5. PSME_00015369-RA

PSME_00015369-RA


Description : (at5g05390 : 671.0) putative laccase, a member of laccase family of genes (17 members in Arabidopsis).; laccase 12 (LAC12); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase 5 (TAIR:AT2G40370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p14133|aso_cucsa : 237.0) L-ascorbate oxidase precursor (EC 1.10.3.3) (Ascorbase) (ASO) - Cucumis sativus (Cucumber) & (reliability: 1342.0) & (original description: no original description)


Gene families : OG_42_0000051 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000051_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00015369-RA
Cluster HCCA clusters: Cluster_87

Target Alias Description ECC score Gene Family Method Actions
105894 No alias laccase 17 0.02 Orthogroups_2024-Update
A4A49_01901 No alias laccase-15 0.02 Orthogroups_2024-Update
A4A49_05486 No alias laccase-17 0.02 Orthogroups_2024-Update
A4A49_20277 No alias laccase-11 0.02 Orthogroups_2024-Update
Bradi2g53800 No alias laccase 12 0.04 Orthogroups_2024-Update
Bradi2g54680 No alias laccase 17 0.02 Orthogroups_2024-Update
Glyma.01G108200 No alias laccase 7 0.03 Orthogroups_2024-Update
HORVU3Hr1G088140.1 No alias EC_1.10 oxidoreductase acting on diphenol or related... 0.04 Orthogroups_2024-Update
HORVU3Hr1G088150.1 No alias EC_1.10 oxidoreductase acting on diphenol or related... 0.04 Orthogroups_2024-Update
LOC_Os01g62490 No alias laccase precursor protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os05g38420 No alias laccase precursor protein, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os12g15680 No alias laccase precursor protein, putative, expressed 0.03 Orthogroups_2024-Update
MA_33288g0010 No alias (at5g05390 : 575.0) putative laccase, a member of... 0.03 Orthogroups_2024-Update
MA_66348g0010 No alias (at5g05390 : 573.0) putative laccase, a member of... 0.04 Orthogroups_2024-Update
PSME_00039023-RA No alias (at5g05390 : 575.0) putative laccase, a member of... 0.04 Orthogroups_2024-Update
Potri.001G054600 No alias laccase 17 0.03 Orthogroups_2024-Update
Potri.007G023300 No alias laccase 11 0.04 Orthogroups_2024-Update
Potri.009G102700 No alias laccase 11 0.02 Orthogroups_2024-Update
Pp1s17_180V6 No alias laccase 90c 0.02 Orthogroups_2024-Update
Seita.8G252500.1 No alias lignin laccase & EC_1.10 oxidoreductase acting on... 0.03 Orthogroups_2024-Update
Solyc02g062650 No alias Laccase (AHRD V3.3 *** I1J8U1_SOYBN) 0.03 Orthogroups_2024-Update
Solyc06g082240 No alias No description available 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEA InterProScan predictions
MF GO:0016491 oxidoreductase activity IEA InterProScan predictions
BP GO:0055114 oxidation-reduction process IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
BP GO:0005976 polysaccharide metabolic process IEP Predicted GO
BP GO:0006073 cellular glucan metabolic process IEP Predicted GO
BP GO:0006631 fatty acid metabolic process IEP Predicted GO
BP GO:0006633 fatty acid biosynthetic process IEP Predicted GO
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
BP GO:0044042 glucan metabolic process IEP Predicted GO
BP GO:0044262 cellular carbohydrate metabolic process IEP Predicted GO
BP GO:0044264 cellular polysaccharide metabolic process IEP Predicted GO
MF GO:0046527 glucosyltransferase activity IEP Predicted GO
MF GO:0050660 flavin adenine dinucleotide binding IEP Predicted GO
InterPro domains Description Start Stop
IPR011707 Cu-oxidase_3 35 147
IPR011706 Cu-oxidase_2 401 534
IPR001117 Cu-oxidase 161 284
No external refs found!