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  5. PSME_00015371-RA

PSME_00015371-RA


Description : (at5g05390 : 674.0) putative laccase, a member of laccase family of genes (17 members in Arabidopsis).; laccase 12 (LAC12); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase 5 (TAIR:AT2G40370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p14133|aso_cucsa : 241.0) L-ascorbate oxidase precursor (EC 1.10.3.3) (Ascorbase) (ASO) - Cucumis sativus (Cucumber) & (reliability: 1348.0) & (original description: no original description)


Gene families : OG_42_0000051 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000051_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00015371-RA
Cluster HCCA clusters: Cluster_84

Target Alias Description ECC score Gene Family Method Actions
A4A49_13107 No alias laccase-14 0.02 Orthogroups_2024-Update
A4A49_13303 No alias laccase-7 0.03 Orthogroups_2024-Update
A4A49_21564 No alias laccase-15 0.02 Orthogroups_2024-Update
A4A49_64623 No alias laccase-5 0.09 Orthogroups_2024-Update
At2g30210 No alias Laccase-3 [Source:UniProtKB/Swiss-Prot;Acc:Q56YT0] 0.02 Orthogroups_2024-Update
At5g09360 No alias Laccase-14 [Source:UniProtKB/Swiss-Prot;Acc:Q9FY79] 0.03 Orthogroups_2024-Update
At5g60020 No alias Laccase-17 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJD5] 0.03 Orthogroups_2024-Update
Bradi2g23350 No alias laccase 17 0.08 Orthogroups_2024-Update
Bradi3g59177 No alias laccase 14 0.02 Orthogroups_2024-Update
Brara.E01299.1 No alias EC_1.10 oxidoreductase acting on diphenol or related... 0.02 Orthogroups_2024-Update
Brara.E02945.1 No alias lignin laccase & EC_1.10 oxidoreductase acting on... 0.02 Orthogroups_2024-Update
Brara.J02661.1 No alias EC_1.10 oxidoreductase acting on diphenol or related... 0.04 Orthogroups_2024-Update
GRMZM2G309594 No alias laccase 7 0.02 Orthogroups_2024-Update
GRMZM2G336337 No alias laccase 12 0.03 Orthogroups_2024-Update
Glyma.07G142600 No alias Laccase/Diphenol oxidase family protein 0.02 Orthogroups_2024-Update
Glyma.14G198900 No alias laccase 3 0.03 Orthogroups_2024-Update
Glyma.18G023600 No alias laccase 5 0.02 Orthogroups_2024-Update
Glyma.18G177300 No alias laccase 17 0.04 Orthogroups_2024-Update
Glyma.18G197400 No alias Laccase/Diphenol oxidase family protein 0.03 Orthogroups_2024-Update
HORVU1Hr1G072470.1 No alias lignin laccase & EC_1.10 oxidoreductase acting on... 0.03 Orthogroups_2024-Update
HORVU3Hr1G086160.1 No alias lignin laccase & EC_1.10 oxidoreductase acting on... 0.03 Orthogroups_2024-Update
LOC_Os01g44330 No alias laccase precursor protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os12g15920 No alias laccase precursor protein, putative, expressed 0.02 Orthogroups_2024-Update
MA_10428927g0020 No alias (at5g05390 : 676.0) putative laccase, a member of... 0.02 Orthogroups_2024-Update
MA_10430789g0010 No alias (at5g05390 : 429.0) putative laccase, a member of... 0.02 Orthogroups_2024-Update
MA_10433807g0010 No alias (q40588|aso_tobac : 375.0) L-ascorbate oxidase precursor... 0.03 Orthogroups_2024-Update
MA_28768g0010 No alias (at2g38080 : 580.0) Encodes a protein with similarity to... 0.02 Orthogroups_2024-Update
MA_33288g0010 No alias (at5g05390 : 575.0) putative laccase, a member of... 0.02 Orthogroups_2024-Update
MA_75861g0010 No alias (at1g18140 : 648.0) putative laccase, a member of... 0.02 Orthogroups_2024-Update
MA_811078g0010 No alias (at5g05390 : 660.0) putative laccase, a member of... 0.02 Orthogroups_2024-Update
PSME_00001502-RA No alias (at2g38080 : 615.0) Encodes a protein with similarity to... 0.02 Orthogroups_2024-Update
PSME_00014449-RA No alias (at5g60020 : 734.0) putative laccase, a member of... 0.05 Orthogroups_2024-Update
PSME_00015480-RA No alias (at5g05390 : 777.0) putative laccase, a member of... 0.02 Orthogroups_2024-Update
PSME_00018932-RA No alias (at5g05390 : 800.0) putative laccase, a member of... 0.06 Orthogroups_2024-Update
PSME_00023647-RA No alias (at5g60020 : 698.0) putative laccase, a member of... 0.02 Orthogroups_2024-Update
PSME_00028271-RA No alias (at5g05390 : 745.0) putative laccase, a member of... 0.04 Orthogroups_2024-Update
PSME_00028638-RA No alias (at5g05390 : 656.0) putative laccase, a member of... 0.02 Orthogroups_2024-Update
PSME_00031560-RA No alias (at5g05390 : 678.0) putative laccase, a member of... 0.04 Orthogroups_2024-Update
PSME_00035589-RA No alias (at5g05390 : 699.0) putative laccase, a member of... 0.03 Orthogroups_2024-Update
Potri.004G156400 No alias laccase 11 0.02 Orthogroups_2024-Update
Potri.006G087100 No alias laccase 17 0.02 Orthogroups_2024-Update
Potri.006G096900 No alias Laccase/Diphenol oxidase family protein 0.02 Orthogroups_2024-Update
Potri.008G064000 No alias Laccase/Diphenol oxidase family protein 0.02 Orthogroups_2024-Update
Potri.010G183600 No alias laccase 5 0.02 Orthogroups_2024-Update
Potri.010G193100 No alias Laccase/Diphenol oxidase family protein 0.02 Orthogroups_2024-Update
Potri.015G040700 No alias laccase 1 0.02 Orthogroups_2024-Update
Potri.019G088900 No alias laccase 14 0.02 Orthogroups_2024-Update
Pp1s175_122V6 No alias laccase 90a 0.02 Orthogroups_2024-Update
Seita.5G365900.1 No alias EC_1.10 oxidoreductase acting on diphenol or related... 0.04 Orthogroups_2024-Update
Seita.9G453900.1 No alias lignin laccase & EC_1.10 oxidoreductase acting on... 0.03 Orthogroups_2024-Update
Solyc04g072280 No alias Laccase (AHRD V3.3 *** A0A022Q9N6_ERYGU) 0.02 Orthogroups_2024-Update
Sopen04g028460 No alias Multicopper oxidase 0.04 Orthogroups_2024-Update
Sopen09g006750 No alias Multicopper oxidase 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEA InterProScan predictions
MF GO:0016491 oxidoreductase activity IEA InterProScan predictions
BP GO:0055114 oxidation-reduction process IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008171 O-methyltransferase activity IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
InterPro domains Description Start Stop
IPR001117 Cu-oxidase 162 311
IPR011707 Cu-oxidase_3 36 148
IPR011706 Cu-oxidase_2 404 537
No external refs found!