PSME_00015609-RA

Description : (at4g17090 : 667.0) Encodes a beta-amylase targeted to the chloroplast. Transgenic BMY8 RNAi lines fail to accumulate maltose during cold shock suggesting that maltose accumulation coincides with BMY8 expression. Apart from maltose, the sugar content of the RNAi lines were similar to wildtype (glucose and sucrose unaffected).; chloroplast beta-amylase (CT-BMY); CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 14, conserved site (InterPro:IPR018238), Glycoside hydrolase, family 14 (InterPro:IPR001554), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 14B, plant (InterPro:IPR001371), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-amylase 1 (TAIR:AT3G23920.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (o22585|amyb_medsa : 455.0) Beta-amylase (EC 3.2.1.2) (1,4-alpha-D-glucan maltohydrolase) - Medicago sativa (Alfalfa) & (reliability: 1334.0) & (original description: no original description)

Gene families : OG_42_0000277 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000277_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00015609-RA
Cluster	HCCA clusters: Cluster_199

Target	Alias	Description	ECC score	Gene Family Method
At2g32290	No alias	Beta-amylase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8L762]	0.02	Orthogroups_2024-Update
Bradi3g33730	No alias	chloroplast beta-amylase	0.02	Orthogroups_2024-Update
Brara.C00838.1	No alias	beta amylase & EC_3.2 glycosylase	0.05	Orthogroups_2024-Update
Brara.H00800.1	No alias	EC_3.2 glycosylase & beta amylase	0.02	Orthogroups_2024-Update
Brara.I00032.1	No alias	beta amylase & EC_3.2 glycosylase	0.02	Orthogroups_2024-Update
Glyma.11G039400	No alias	chloroplast beta-amylase	0.02	Orthogroups_2024-Update
Glyma.17G150100	No alias	chloroplast beta-amylase	0.02	Orthogroups_2024-Update
PSME_00015611-RA	No alias	(at4g17090 : 549.0) Encodes a beta-amylase targeted to...	0.03	Orthogroups_2024-Update
PSME_00015760-RA	No alias	(at3g23920 : 407.0) Encodes a chloroplast beta-amylase....	0.05	Orthogroups_2024-Update
PSME_00048762-RA	No alias	(at3g23920 : 741.0) Encodes a chloroplast beta-amylase....	0.04	Orthogroups_2024-Update
PSME_00049129-RA	No alias	(at3g23920 : 726.0) Encodes a chloroplast beta-amylase....	0.04	Orthogroups_2024-Update
PSME_00053865-RA	No alias	(at3g23920 : 404.0) Encodes a chloroplast beta-amylase....	0.04	Orthogroups_2024-Update
Sobic.002G329500.1	No alias	EC_3.2 glycosylase & beta amylase	0.03	Orthogroups_2024-Update
Solyc07g052690	No alias	Beta-amylase (AHRD V3.3 - K4CFG8_SOLLC)	0.02	Orthogroups_2024-Update
Solyc08g007130	No alias	Beta-amylase (AHRD V3.3 *** K4CIK0_SOLLC)	0.04	Orthogroups_2024-Update
Sopen08g001780	No alias	Glycosyl hydrolase family 14	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
BP	GO:0000272	polysaccharide catabolic process	IEA	InterProScan predictions
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	None	Extended
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0016052	carbohydrate catabolic process	None	Extended
MF	GO:0016160	amylase activity	None	Extended
MF	GO:0016161	beta-amylase activity	IEA	InterProScan predictions
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001101	response to acid chemical	IEP	Predicted GO
MF	GO:0001871	pattern binding	IEP	Predicted GO
MF	GO:0003682	chromatin binding	IEP	Predicted GO
MF	GO:0003993	acid phosphatase activity	IEP	Predicted GO
BP	GO:0010035	response to inorganic substance	IEP	Predicted GO
BP	GO:0010167	response to nitrate	IEP	Predicted GO
BP	GO:0015698	inorganic anion transport	IEP	Predicted GO
BP	GO:0015706	nitrate transport	IEP	Predicted GO
MF	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	IEP	Predicted GO
MF	GO:0030246	carbohydrate binding	IEP	Predicted GO
MF	GO:0030247	polysaccharide binding	IEP	Predicted GO
MF	GO:0051213	dioxygenase activity	IEP	Predicted GO
BP	GO:1901698	response to nitrogen compound	IEP	Predicted GO
BP	GO:1901700	response to oxygen-containing compound	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001554	Glyco_hydro_14	100	522

External Links

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PSME_00015609-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation