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  5. PSME_00015616-RA

PSME_00015616-RA


Description : (at5g03760 : 481.0) encodes a beta-mannan synthase that is required for agrobacterium-mediated plant genetic transformation involves a complex interaction between the bacterium and the host plant. 3' UTR is involved in transcriptional regulation and the gene is expressed in the elongation zone of the root.; ATCSLA09; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: cellulose synthase-like A02 (TAIR:AT5G22740.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 962.0) & (original description: no original description)


Gene families : OG_42_0000129 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000129_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00015616-RA
Cluster HCCA clusters: Cluster_159

Target Alias Description ECC score Gene Family Method Actions
AC183932.3_FG007 No alias Cellulose-synthase-like C12 0.02 Orthogroups_2024-Update
At4g13410 No alias Probable glucomannan 4-beta-mannosyltransferase 15... 0.03 Orthogroups_2024-Update
At5g16190 No alias cellulose synthase like A11 [Source:TAIR;Acc:AT5G16190] 0.03 Orthogroups_2024-Update
Brara.I04464.1 No alias 1,4-beta-glucan synthase *(CSLC) & EC_2.4 glycosyltransferase 0.02 Orthogroups_2024-Update
GRMZM2G028286 No alias Cellulose-synthase-like C12 0.02 Orthogroups_2024-Update
GRMZM2G074792 No alias Cellulose-synthase-like C12 0.02 Orthogroups_2024-Update
HORVU5Hr1G098490.11 No alias 1,4-beta-glucan synthase *(CSLC) & EC_2.4 glycosyltransferase 0.02 Orthogroups_2024-Update
Mp8g17530.1 No alias 1,4-beta-glucan synthase (CSLC) 0.01 Orthogroups_2024-Update
Sobic.001G252700.2 No alias EC_2.4 glycosyltransferase & mannan synthase *(CSLA) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003839 gamma-glutamylcyclotransferase activity IEP Predicted GO
MF GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity IEP Predicted GO
MF GO:0004749 ribose phosphate diphosphokinase activity IEP Predicted GO
MF GO:0004866 endopeptidase inhibitor activity IEP Predicted GO
MF GO:0004869 cysteine-type endopeptidase inhibitor activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
BP GO:0006694 steroid biosynthetic process IEP Predicted GO
BP GO:0006749 glutathione metabolic process IEP Predicted GO
BP GO:0006751 glutathione catabolic process IEP Predicted GO
BP GO:0006801 superoxide metabolic process IEP Predicted GO
BP GO:0008202 steroid metabolic process IEP Predicted GO
MF GO:0008236 serine-type peptidase activity IEP Predicted GO
MF GO:0016229 steroid dehydrogenase activity IEP Predicted GO
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016778 diphosphotransferase activity IEP Predicted GO
MF GO:0016842 amidine-lyase activity IEP Predicted GO
MF GO:0017171 serine hydrolase activity IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0030414 peptidase inhibitor activity IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
MF GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predicted GO
BP GO:0042219 cellular modified amino acid catabolic process IEP Predicted GO
BP GO:0043171 peptide catabolic process IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
BP GO:0044273 sulfur compound catabolic process IEP Predicted GO
BP GO:0051187 cofactor catabolic process IEP Predicted GO
MF GO:0061134 peptidase regulator activity IEP Predicted GO
MF GO:0061135 endopeptidase regulator activity IEP Predicted GO
BP GO:0072593 reactive oxygen species metabolic process IEP Predicted GO
BP GO:1901362 organic cyclic compound biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001173 Glyco_trans_2-like 30 182
No external refs found!