Description : (at4g35785 : 155.0) RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: ribonucleoprotein complex, chloroplast; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G07350.1). & (reliability: 310.0) & (original description: no original description)
Gene families : OG_42_0001263 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001263_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Pseudotsuga release: PSME_00015703-RA | |
Cluster | HCCA clusters: Cluster_146 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
GRMZM2G152111 | No alias | RNA-binding (RRM/RBD/RNP motifs) family protein | 0.03 | Orthogroups_2024-Update | |
LOC_Os03g15890 | No alias | RNA recognition motif containing protein, expressed | 0.04 | Orthogroups_2024-Update | |
Potri.001G248100 | No alias | RNA-binding (RRM/RBD/RNP motifs) family protein | 0.03 | Orthogroups_2024-Update | |
Potri.003G130301 | No alias | RNA-binding (RRM/RBD/RNP motifs) family protein | 0.02 | Orthogroups_2024-Update | |
Solyc02g083320 | No alias | RNA-binding (RRM/RBD/RNP motifs) family protein (AHRD... | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000774 | adenyl-nucleotide exchange factor activity | IEP | Predicted GO |
BP | GO:0001522 | pseudouridine synthesis | IEP | Predicted GO |
MF | GO:0005048 | signal sequence binding | IEP | Predicted GO |
CC | GO:0005789 | endoplasmic reticulum membrane | IEP | Predicted GO |
BP | GO:0006479 | protein methylation | IEP | Predicted GO |
BP | GO:0006621 | protein retention in ER lumen | IEP | Predicted GO |
MF | GO:0008170 | N-methyltransferase activity | IEP | Predicted GO |
BP | GO:0008213 | protein alkylation | IEP | Predicted GO |
MF | GO:0008270 | zinc ion binding | IEP | Predicted GO |
MF | GO:0008276 | protein methyltransferase activity | IEP | Predicted GO |
MF | GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | IEP | Predicted GO |
BP | GO:0009451 | RNA modification | IEP | Predicted GO |
MF | GO:0016278 | lysine N-methyltransferase activity | IEP | Predicted GO |
MF | GO:0016279 | protein-lysine N-methyltransferase activity | IEP | Predicted GO |
BP | GO:0016569 | covalent chromatin modification | IEP | Predicted GO |
BP | GO:0016570 | histone modification | IEP | Predicted GO |
BP | GO:0016571 | histone methylation | IEP | Predicted GO |
BP | GO:0018022 | peptidyl-lysine methylation | IEP | Predicted GO |
MF | GO:0018024 | histone-lysine N-methyltransferase activity | IEP | Predicted GO |
BP | GO:0018205 | peptidyl-lysine modification | IEP | Predicted GO |
BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Predicted GO |
BP | GO:0032259 | methylation | IEP | Predicted GO |
BP | GO:0032507 | maintenance of protein location in cell | IEP | Predicted GO |
MF | GO:0033218 | amide binding | IEP | Predicted GO |
BP | GO:0034968 | histone lysine methylation | IEP | Predicted GO |
BP | GO:0035437 | maintenance of protein localization in endoplasmic reticulum | IEP | Predicted GO |
MF | GO:0042054 | histone methyltransferase activity | IEP | Predicted GO |
BP | GO:0042254 | ribosome biogenesis | IEP | Predicted GO |
MF | GO:0042277 | peptide binding | IEP | Predicted GO |
MF | GO:0042802 | identical protein binding | IEP | Predicted GO |
MF | GO:0042803 | protein homodimerization activity | IEP | Predicted GO |
BP | GO:0043414 | macromolecule methylation | IEP | Predicted GO |
BP | GO:0044085 | cellular component biogenesis | IEP | Predicted GO |
CC | GO:0044432 | endoplasmic reticulum part | IEP | Predicted GO |
BP | GO:0045185 | maintenance of protein location | IEP | Predicted GO |
MF | GO:0046914 | transition metal ion binding | IEP | Predicted GO |
MF | GO:0046923 | ER retention sequence binding | IEP | Predicted GO |
BP | GO:0051235 | maintenance of location | IEP | Predicted GO |
BP | GO:0051651 | maintenance of location in cell | IEP | Predicted GO |
MF | GO:0060589 | nucleoside-triphosphatase regulator activity | IEP | Predicted GO |
MF | GO:0060590 | ATPase regulator activity | IEP | Predicted GO |
BP | GO:0072595 | maintenance of protein localization in organelle | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR000504 | RRM_dom | 54 | 123 |
No external refs found! |