PSME_00015731-RA

Description : (p93847|rl10_solme : 394.0) 60S ribosomal protein L10 (EQM) - Solanum melongena (Eggplant) (Aubergine) & (at1g14320 : 384.0) Encodes a ribosomal protein L10 and may be involved in translation regulation. Semi-dominant mutations in SAC552 can suppress defects in acaulis5, which encodes a thermospermine synthase, by enhancing translation of acl5 and itself.; SUPPRESSOR OF ACAULIS 52 (SAC52); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: cellular response to UV-B, translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, plasma membrane, large ribosomal subunit; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L10e (InterPro:IPR001197), Ribosomal protein L10e/L16 (InterPro:IPR016180); BEST Arabidopsis thaliana protein match is: Ribosomal protein L16p/L10e family protein (TAIR:AT1G26910.1); Has 1844 Blast hits to 1606 proteins in 584 species: Archae - 300; Bacteria - 0; Metazoa - 671; Fungi - 224; Plants - 162; Viruses - 0; Other Eukaryotes - 487 (source: NCBI BLink). & (reliability: 768.0) & (original description: no original description)

Gene families : OG_42_0001900 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001900_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00015731-RA
Cluster	HCCA clusters: Cluster_26

Target	Alias	Description	ECC score	Gene Family Method
A4A49_60639	No alias	60s ribosomal protein l10	0.04	Orthogroups_2024-Update
At1g66580	No alias	60S ribosomal protein L10-3...	0.03	Orthogroups_2024-Update
Bradi2g34440	No alias	Ribosomal protein L16p/L10e family protein	0.05	Orthogroups_2024-Update
Brara.F00957.1	No alias	component *(uL16) of large ribosomal-subunit (LSU) proteome	0.08	Orthogroups_2024-Update
Brara.G02465.1	No alias	component *(uL16) of large ribosomal-subunit (LSU) proteome	0.07	Orthogroups_2024-Update
Brara.G02907.1	No alias	component *(uL16) of large ribosomal-subunit (LSU) proteome	0.09	Orthogroups_2024-Update
Brara.H02579.1	No alias	component *(uL16) of large ribosomal-subunit (LSU) proteome	0.07	Orthogroups_2024-Update
Cre09.g388200	No alias	senescence associated gene 24	0.11	Orthogroups_2024-Update
Glyma.02G220000	No alias	Ribosomal protein L16p/L10e family protein	0.07	Orthogroups_2024-Update
Glyma.06G140900	No alias	Ribosomal protein L16p/L10e family protein	0.02	Orthogroups_2024-Update
Glyma.14G187800	No alias	Ribosomal protein L16p/L10e family protein	0.07	Orthogroups_2024-Update
HORVU1Hr1G024710.2	No alias	component *(uL16) of large ribosomal-subunit (LSU) proteome	0.07	Orthogroups_2024-Update
MA_17326g0010	No alias	(p93847\|rl10_solme : 399.0) 60S ribosomal protein L10...	0.03	Orthogroups_2024-Update
Mp4g23990.1	No alias	component RPL10 of LSU proteome component	0.03	Orthogroups_2024-Update
Pp1s22_94V6	No alias	60s ribosomal protein l10-3	0.09	Orthogroups_2024-Update
Pp1s2_197V6	No alias	60s ribosomal protein l10-3	0.04	Orthogroups_2024-Update
Pp1s347_24V6	No alias	60s ribosomal protein l10-3	0.05	Orthogroups_2024-Update
Seita.1G023800.1	No alias	component *(uL16) of large ribosomal-subunit (LSU) proteome	0.04	Orthogroups_2024-Update
Seita.3G099700.1	No alias	component *(uL16) of large ribosomal-subunit (LSU) proteome	0.03	Orthogroups_2024-Update
Sobic.001G177800.1	No alias	component *(uL16) of large ribosomal-subunit (LSU) proteome	0.08	Orthogroups_2024-Update
Sobic.004G103700.1	No alias	component *(uL16) of large ribosomal-subunit (LSU) proteome	0.1	Orthogroups_2024-Update
Solyc06g007520	No alias	60S ribosomal protein L10 (AHRD V3.3 *** RL10_SOLME)	0.12	Orthogroups_2024-Update
Solyc06g082650	No alias	60S ribosomal protein L10 (AHRD V3.3 *** RL10_SOLME)	0.12	Orthogroups_2024-Update
Solyc06g082670	No alias	60S ribosomal protein L10 (AHRD V3.3 *** RL10_SOLME)	0.12	Orthogroups_2024-Update
Sopen06g002430	No alias	Ribosomal protein L16p/L10e	0.1	Orthogroups_2024-Update
Sopen06g034040	No alias	Ribosomal protein L16p/L10e	0.07	Orthogroups_2024-Update
Sopen06g034060	No alias	Ribosomal protein L16p/L10e	0.08	Orthogroups_2024-Update
evm.model.tig00001424.5	No alias	(p45636\|rl102_orysa : 214.0) 60S ribosomal protein L10-2...	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)	IEP	Predicted GO
MF	GO:0000774	adenyl-nucleotide exchange factor activity	IEP	Predicted GO
MF	GO:0004602	glutathione peroxidase activity	IEP	Predicted GO
CC	GO:0005622	intracellular	IEP	Predicted GO
CC	GO:0005759	mitochondrial matrix	IEP	Predicted GO
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	Predicted GO
BP	GO:0006457	protein folding	IEP	Predicted GO
BP	GO:0015985	energy coupled proton transport, down electrochemical gradient	IEP	Predicted GO
BP	GO:0015986	ATP synthesis coupled proton transport	IEP	Predicted GO
MF	GO:0016853	isomerase activity	IEP	Predicted GO
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predicted GO
CC	GO:0031974	membrane-enclosed lumen	IEP	Predicted GO
CC	GO:0033177	proton-transporting two-sector ATPase complex, proton-transporting domain	IEP	Predicted GO
BP	GO:0042254	ribosome biogenesis	IEP	Predicted GO
MF	GO:0042802	identical protein binding	IEP	Predicted GO
MF	GO:0042803	protein homodimerization activity	IEP	Predicted GO
CC	GO:0043233	organelle lumen	IEP	Predicted GO
BP	GO:0044085	cellular component biogenesis	IEP	Predicted GO
CC	GO:0044429	mitochondrial part	IEP	Predicted GO
CC	GO:0044455	mitochondrial membrane part	IEP	Predicted GO
CC	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)	IEP	Predicted GO
MF	GO:0060590	ATPase regulator activity	IEP	Predicted GO
CC	GO:0070013	intracellular organelle lumen	IEP	Predicted GO
CC	GO:0098798	mitochondrial protein complex	IEP	Predicted GO
CC	GO:0098800	inner mitochondrial membrane protein complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR016180	Ribosomal_L10e/L16	21	175

External Links

No external refs found!

PSME_00015731-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation