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  5. PSME_00015735-RA

PSME_00015735-RA


Description : (p34800|ccn1_antma : 353.0) G2/mitotic-specific cyclin-1 - Antirrhinum majus (Garden snapdragon) & (at5g06150 : 325.0) Encodes a cyclin whose expression is reduced in response to high salt.; CYC1BAT; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin-like (InterPro:IPR011028), Cyclin, N-terminal (InterPro:IPR006671), Cyclin, A/B/D/E (InterPro:IPR014400), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCLIN B1;3 (TAIR:AT3G11520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 650.0) & (original description: no original description)


Gene families : OG_42_0000120 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000120_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00015735-RA
Cluster HCCA clusters: Cluster_235

Target Alias Description ECC score Gene Family Method Actions
A4A49_35953 No alias g2mitotic-specific cyclin s13-6 0.04 Orthogroups_2024-Update
At2g01310 No alias At2g01310 [Source:UniProtKB/TrEMBL;Acc:Q9ZU36] 0.04 Orthogroups_2024-Update
Glyma.06G044000 No alias Cyclin A3;1 0.03 Orthogroups_2024-Update
LOC_Os06g51110 No alias cyclin, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os12g20324 No alias cyclin-A1, putative, expressed 0.02 Orthogroups_2024-Update
Potri.009G066600 No alias Cyclin B1;4 0.02 Orthogroups_2024-Update
Seita.3G194700.1 No alias regulatory protein *(CYCB) of cell cycle 0.03 Orthogroups_2024-Update
Seita.4G286400.1 No alias regulatory protein *(CYCB) of cell cycle 0.02 Orthogroups_2024-Update
Sobic.006G179200.1 No alias regulatory protein *(CYCB) of cell cycle 0.05 Orthogroups_2024-Update
Solyc02g061690 No alias LOW QUALITY:cyclinB2_2 0.02 Orthogroups_2024-Update
Sopen03g039320 No alias Cyclin, N-terminal domain 0.02 Orthogroups_2024-Update
Sopen12g030450 No alias Cyclin, N-terminal domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
MF GO:0003756 protein disulfide isomerase activity IEP Predicted GO
CC GO:0005783 endoplasmic reticulum IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
CC GO:0008023 transcription elongation factor complex IEP Predicted GO
MF GO:0008234 cysteine-type peptidase activity IEP Predicted GO
BP GO:0016052 carbohydrate catabolic process IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Predicted GO
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016860 intramolecular oxidoreductase activity IEP Predicted GO
MF GO:0016864 intramolecular oxidoreductase activity, transposing S-S bonds IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
CC GO:0070449 elongin complex IEP Predicted GO
InterPro domains Description Start Stop
IPR004367 Cyclin_C-dom 351 474
IPR006671 Cyclin_N 224 348
No external refs found!