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  5. PSME_00015886-RA

PSME_00015886-RA


Description : (at1g30330 : 314.0) Encodes a member of the auxin response factor family. Mediates auxin response via expression of auxin regulated genes. Acts redundantly with ARF8 to control stamen elongation and flower maturation. Expression of ARF6 is controlled by miR167.; auxin response factor 6 (ARF6); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: flower development, response to auxin stimulus, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), AUX/IAA protein (InterPro:IPR003311), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: auxin response factor 8 (TAIR:AT5G37020.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 628.0) & (original description: no original description)


Gene families : OG_42_0000050 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000050_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Pseudotsuga release: PSME_00015886-RA
Cluster HCCA clusters: Cluster_198

Target Alias Description ECC score Gene Family Method Actions
424113 No alias auxin response factor 6 0.03 Orthogroups_2024-Update
At4g23980 No alias Auxin response factor 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9XED8] 0.02 Orthogroups_2024-Update
Bradi3g45880 No alias auxin response factor 1 0.04 Orthogroups_2024-Update
Brara.A00733.1 No alias ARF-type transcription factor 0.03 Orthogroups_2024-Update
Brara.G01369.1 No alias ARF-type transcription factor 0.02 Orthogroups_2024-Update
Glyma.08G008100 No alias auxin response factor 2 0.03 Orthogroups_2024-Update
Glyma.16G023600 No alias auxin response factor 18 0.04 Orthogroups_2024-Update
LOC_Os12g41950 No alias auxin response factor, putative, expressed 0.03 Orthogroups_2024-Update
MA_92651g0010 No alias (at5g62000 : 742.0) Encodes an auxin response factor.... 0.04 Orthogroups_2024-Update
Seita.3G321500.1 No alias ARF-type transcription factor 0.03 Orthogroups_2024-Update
Solyc07g043620 No alias Auxin Response Factor 6B 0.02 Orthogroups_2024-Update
evm.model.tig00020904.93 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004721 phosphoprotein phosphatase activity IEP Predicted GO
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005086 ARF guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Predicted GO
BP GO:0009966 regulation of signal transduction IEP Predicted GO
BP GO:0010646 regulation of cell communication IEP Predicted GO
BP GO:0016311 dephosphorylation IEP Predicted GO
MF GO:0016791 phosphatase activity IEP Predicted GO
MF GO:0019899 enzyme binding IEP Predicted GO
BP GO:0023051 regulation of signaling IEP Predicted GO
BP GO:0032012 regulation of ARF protein signal transduction IEP Predicted GO
MF GO:0042578 phosphoric ester hydrolase activity IEP Predicted GO
BP GO:0046578 regulation of Ras protein signal transduction IEP Predicted GO
BP GO:0048583 regulation of response to stimulus IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Predicted GO
MF GO:0098772 molecular function regulator IEP Predicted GO
BP GO:1902531 regulation of intracellular signal transduction IEP Predicted GO
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 107 208
No external refs found!