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  5. PSME_00015948-RA

PSME_00015948-RA


Description : (at5g24930 : 259.0) CONSTANS-like 4 (COL4); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: CONSTANS-like 3 (TAIR:AT2G24790.1); Has 3148 Blast hits to 2480 proteins in 140 species: Archae - 0; Bacteria - 4; Metazoa - 5; Fungi - 0; Plants - 2958; Viruses - 0; Other Eukaryotes - 181 (source: NCBI BLink). & (reliability: 518.0) & (original description: no original description)


Gene families : OG_42_0000725 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000725_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00015948-RA
Cluster HCCA clusters: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
102902 No alias CONSTANS-like 5 0.03 Orthogroups_2024-Update
A4A49_15211 No alias zinc finger protein constans-like 4 0.03 Orthogroups_2024-Update
At2g24790 No alias Zinc finger protein CONSTANS-LIKE 3... 0.02 Orthogroups_2024-Update
Bradi1g31280 No alias CONSTANS-like 4 0.04 Orthogroups_2024-Update
Bradi3g05800 No alias CONSTANS-like 3 0.02 Orthogroups_2024-Update
Bradi3g48447 No alias CONSTANS-like 3 0.03 Orthogroups_2024-Update
Brara.A03895.1 No alias floral promoter *(CONSTANS) & BBX class-I transcription factor 0.03 Orthogroups_2024-Update
Brara.C02983.1 No alias floral promoter *(CONSTANS) 0.03 Orthogroups_2024-Update
Brara.J01176.1 No alias floral promoter *(CONSTANS) & BBX class-I transcription factor 0.02 Orthogroups_2024-Update
Brara.J01927.1 No alias floral promoter *(CONSTANS) & BBX class-I transcription factor 0.03 Orthogroups_2024-Update
Cre16.g675100 No alias CONSTANS-like 2 0.03 Orthogroups_2024-Update
Glyma.04G058900 No alias CONSTANS-like 4 0.04 Orthogroups_2024-Update
Glyma.06G059600 No alias CONSTANS-like 4 0.04 Orthogroups_2024-Update
Glyma.18G278100 No alias CONSTANS-like 2 0.03 Orthogroups_2024-Update
HORVU0Hr1G022380.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU2Hr1G085910.21 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os06g44450 No alias CCT/B-box zinc finger protein, putative, expressed 0.02 Orthogroups_2024-Update
MA_54929g0010 No alias (at5g24930 : 142.0) CONSTANS-like 4 (COL4); FUNCTIONS... 0.04 Orthogroups_2024-Update
Potri.006G173600 No alias CONSTANS-like 5 0.04 Orthogroups_2024-Update
Seita.4G192300.1 No alias floral promoter *(CONSTANS) & BBX class-I transcription factor 0.03 Orthogroups_2024-Update
Sobic.006G135100.1 No alias floral promoter *(CONSTANS) & BBX class-I transcription factor 0.04 Orthogroups_2024-Update
Sopen02g034240 No alias CCT motif 0.03 Orthogroups_2024-Update
Sopen08g002490 No alias CCT motif 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0004860 protein kinase inhibitor activity IEP Predicted GO
MF GO:0004861 cyclin-dependent protein serine/threonine kinase inhibitor activity IEP Predicted GO
MF GO:0005507 copper ion binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0007050 cell cycle arrest IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP Predicted GO
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Predicted GO
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Predicted GO
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Predicted GO
MF GO:0019207 kinase regulator activity IEP Predicted GO
MF GO:0019210 kinase inhibitor activity IEP Predicted GO
MF GO:0019887 protein kinase regulator activity IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
MF GO:0030291 protein serine/threonine kinase inhibitor activity IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0045786 negative regulation of cell cycle IEP Predicted GO
BP GO:0048523 negative regulation of cellular process IEP Predicted GO
MF GO:0051213 dioxygenase activity IEP Predicted GO
BP GO:0051726 regulation of cell cycle IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
InterPro domains Description Start Stop
IPR010402 CCT_domain 317 359
IPR000315 Znf_B-box 26 67
IPR000315 Znf_B-box 68 113
No external refs found!