PSME_00016110-RA

Description : (p08926|ruba_pea : 852.0) RuBisCO large subunit-binding protein subunit alpha, chloroplast precursor (60 kDa chaperonin subunit alpha) (CPN-60 alpha) - Pisum sativum (Garden pea) & (at2g28000 : 844.0) Encodes chaperonin-60 alpha, a molecular chaperone involved in Rubisco folding. Mutants display aberrant chloroplast and embryo development.; chaperonin-60alpha (CPN60A); FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding, chloroplast organization, embryo development; LOCATED IN: in 8 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperonin Cpn60, conserved site (InterPro:IPR018370), Chaperonin Cpn60 (InterPro:IPR001844); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT5G18820.1); Has 33896 Blast hits to 33887 proteins in 8716 species: Archae - 792; Bacteria - 21835; Metazoa - 1656; Fungi - 1573; Plants - 797; Viruses - 2; Other Eukaryotes - 7241 (source: NCBI BLink). & (reliability: 1688.0) & (original description: no original description)

Gene families : OG_42_0000358 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000358_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00016110-RA
Cluster	HCCA clusters: Cluster_26

Target	Alias	Description	ECC score	Gene Family Method
168153	No alias	chaperonin 60 beta	0.03	Orthogroups_2024-Update
AC215201.3_FG005	No alias	chaperonin-60alpha	0.02	Orthogroups_2024-Update
At2g33210	No alias	Chaperonin CPN60-like 1, mitochondrial...	0.03	Orthogroups_2024-Update
At3g13470	No alias	Chaperonin 60 subunit beta 2, chloroplastic...	0.02	Orthogroups_2024-Update
At3g23990	No alias	Chaperonin CPN60, mitochondrial...	0.04	Orthogroups_2024-Update
At5g18820	No alias	Chaperonin 60 subunit alpha 2, chloroplastic...	0.03	Orthogroups_2024-Update
Bradi5g11240	No alias	TCP-1/cpn60 chaperonin family protein	0.02	Orthogroups_2024-Update
Brara.C03496.1	No alias	chaperone *(Hsp60)	0.05	Orthogroups_2024-Update
Brara.E01070.1	No alias	chaperone *(Hsp60)	0.03	Orthogroups_2024-Update
Brara.H00053.1	No alias	chaperone *(Hsp60) & subunit beta of Cpn60 chaperonin...	0.02	Orthogroups_2024-Update
Glyma.10G127800	No alias	heat shock protein 60	0.04	Orthogroups_2024-Update
Kfl00113_0150	kfl00113_0150_v1.1	(p08926\|ruba_pea : 818.0) RuBisCO large subunit-binding...	0.01	Orthogroups_2024-Update
Potri.010G135100	No alias	TCP-1/cpn60 chaperonin family protein	0.03	Orthogroups_2024-Update
Pp1s52_245V6	No alias	-like atpase	0.03	Orthogroups_2024-Update
Seita.2G129300.1	No alias	subunit alpha of Cpn60 chaperonin complex & subunit...	0.04	Orthogroups_2024-Update
Sobic.001G003100.1	No alias	subunit alpha of Cpn60 chaperonin complex & subunit...	0.02	Orthogroups_2024-Update
Sobic.001G437801.1	No alias	subunit beta of CPN60 assembly chaperone heterodimer &...	0.03	Orthogroups_2024-Update
Sobic.002G131000.1	No alias	subunit alpha of Cpn60 chaperonin complex & subunit...	0.03	Orthogroups_2024-Update
Solyc02g068730	No alias	Chaperonin 60 alpha subunit (AHRD V3.3 *** Q9ZTV1_CANLI)	0.03	Orthogroups_2024-Update
Solyc03g121640	No alias	Chaperonin Cpn60 (AHRD V3.3 *** A0A124SDT3_CYNCS)	0.02	Orthogroups_2024-Update
Solyc09g091180	No alias	Chaperonin CPN60, mitochondrial (AHRD V3.3 *** CH60A_ARATH)	0.03	Orthogroups_2024-Update
Sopen03g039670	No alias	TCP-1/cpn60 chaperonin family	0.02	Orthogroups_2024-Update
Sopen09g034150	No alias	TCP-1/cpn60 chaperonin family	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
MF	GO:0008144	drug binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000774	adenyl-nucleotide exchange factor activity	IEP	Predicted GO
MF	GO:0003678	DNA helicase activity	IEP	Predicted GO
MF	GO:0003682	chromatin binding	IEP	Predicted GO
MF	GO:0003690	double-stranded DNA binding	IEP	Predicted GO
MF	GO:0005048	signal sequence binding	IEP	Predicted GO
CC	GO:0005741	mitochondrial outer membrane	IEP	Predicted GO
BP	GO:0006364	rRNA processing	IEP	Predicted GO
BP	GO:0006457	protein folding	IEP	Predicted GO
BP	GO:0006621	protein retention in ER lumen	IEP	Predicted GO
BP	GO:0016072	rRNA metabolic process	IEP	Predicted GO
MF	GO:0016854	racemase and epimerase activity	IEP	Predicted GO
MF	GO:0016855	racemase and epimerase activity, acting on amino acids and derivatives	IEP	Predicted GO
CC	GO:0019867	outer membrane	IEP	Predicted GO
MF	GO:0030234	enzyme regulator activity	IEP	Predicted GO
CC	GO:0031090	organelle membrane	IEP	Predicted GO
CC	GO:0031966	mitochondrial membrane	IEP	Predicted GO
CC	GO:0031968	organelle outer membrane	IEP	Predicted GO
BP	GO:0032507	maintenance of protein location in cell	IEP	Predicted GO
MF	GO:0033218	amide binding	IEP	Predicted GO
BP	GO:0035437	maintenance of protein localization in endoplasmic reticulum	IEP	Predicted GO
MF	GO:0036361	racemase activity, acting on amino acids and derivatives	IEP	Predicted GO
MF	GO:0042277	peptide binding	IEP	Predicted GO
MF	GO:0042802	identical protein binding	IEP	Predicted GO
MF	GO:0042803	protein homodimerization activity	IEP	Predicted GO
BP	GO:0045185	maintenance of protein location	IEP	Predicted GO
MF	GO:0046923	ER retention sequence binding	IEP	Predicted GO
MF	GO:0046983	protein dimerization activity	IEP	Predicted GO
MF	GO:0051087	chaperone binding	IEP	Predicted GO
BP	GO:0051235	maintenance of location	IEP	Predicted GO
BP	GO:0051651	maintenance of location in cell	IEP	Predicted GO
MF	GO:0060589	nucleoside-triphosphatase regulator activity	IEP	Predicted GO
MF	GO:0060590	ATPase regulator activity	IEP	Predicted GO
BP	GO:0065007	biological regulation	IEP	Predicted GO
BP	GO:0065008	regulation of biological quality	IEP	Predicted GO
BP	GO:0072595	maintenance of protein localization in organelle	IEP	Predicted GO
CC	GO:0098588	bounding membrane of organelle	IEP	Predicted GO
CC	GO:0098805	whole membrane	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002423	Cpn60/TCP-1	80	583

External Links

No external refs found!

PSME_00016110-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation