Sopen05g027770

Description : Auxin response factor

Gene families : OG_42_0000050 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000050_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen05g027770
Cluster	HCCA clusters: Cluster_20

Target	Alias	Description	ECC score	Gene Family Method
AC207656.3_FG002	No alias	auxin response factor 16	0.03	Orthogroups_2024-Update
At4g23980	No alias	Auxin response factor 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9XED8]	0.02	Orthogroups_2024-Update
At4g30080	No alias	Auxin response factor 16 [Source:UniProtKB/Swiss-Prot;Acc:Q93YR9]	0.02	Orthogroups_2024-Update
At5g62000	No alias	Auxin response factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q94JM3]	0.03	Orthogroups_2024-Update
Bradi1g32547	No alias	auxin response factor 6	0.02	Orthogroups_2024-Update
Bradi3g45880	No alias	auxin response factor 1	0.02	Orthogroups_2024-Update
Bradi5g10950	No alias	auxin response factor 1	0.02	Orthogroups_2024-Update
Brara.E00126.1	No alias	ARF-type transcription factor	0.02	Orthogroups_2024-Update
Brara.F01355.1	No alias	ARF-type transcription factor & auxin signal mediator...	0.02	Orthogroups_2024-Update
GRMZM2G035405	No alias	auxin response factor 6	0.02	Orthogroups_2024-Update
GRMZM2G338259	No alias	auxin response factor 2	0.04	Orthogroups_2024-Update
GRMZM2G390641	No alias	auxin response factor 16	0.03	Orthogroups_2024-Update
Glyma.06G164900	No alias	auxin response factor 2	0.03	Orthogroups_2024-Update
Glyma.11G145500	No alias	auxin response factor 10	0.04	Orthogroups_2024-Update
Glyma.12G076200	No alias	auxin response factor 10	0.04	Orthogroups_2024-Update
Glyma.12G164100	No alias	auxin response factor 1	0.02	Orthogroups_2024-Update
Glyma.13G174000	No alias	Transcriptional factor B3 family protein /...	0.02	Orthogroups_2024-Update
Glyma.13G325200	No alias	auxin response factor 10	0.04	Orthogroups_2024-Update
MA_10432349g0010	No alias	(at5g62000 : 394.0) Encodes an auxin response factor....	0.02	Orthogroups_2024-Update
PSME_00020341-RA	No alias	(at1g19220 : 630.0) Encodes an auxin response factor...	0.03	Orthogroups_2024-Update
Potri.006G138500	No alias	Transcriptional factor B3 family protein /...	0.03	Orthogroups_2024-Update
Pp1s163_119V6	No alias	auxin response	0.02	Orthogroups_2024-Update
Pp1s64_138V6	No alias	arf1-binding protein	0.02	Orthogroups_2024-Update
Seita.1G241500.1	No alias	ARF-type transcription factor	0.02	Orthogroups_2024-Update
Seita.4G257800.1	No alias	ARF-type transcription factor	0.02	Orthogroups_2024-Update
Sobic.009G231800.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Solyc01g103050	No alias	Auxin Response Factor 1	0.02	Orthogroups_2024-Update
Solyc03g031970	No alias	Auxin response factor (AHRD V3.3 *** A0A191T8S7_SALMI)	0.02	Orthogroups_2024-Update
Solyc03g118290	No alias	auxin response factor 2A	0.06	Orthogroups_2024-Update
Solyc05g047460	No alias	Auxin Response Factor 7B	0.04	Orthogroups_2024-Update
Solyc07g016180	No alias	Auxin Response Factor 7A	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	InterProScan predictions
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	InterProScan predictions
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	130	231
IPR010525	Auxin_resp	256	339
IPR033389	AUX/IAA_dom	987	1070

External Links

No external refs found!

Sopen05g027770

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation