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  5. PSME_00016171-RA

PSME_00016171-RA


Description : (at4g00830 : 130.0) RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G52660.2). & (reliability: 260.0) & (original description: no original description)


Gene families : OG_42_0009711 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009711_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Pseudotsuga release: PSME_00016171-RA
Cluster HCCA clusters: Cluster_122

Target Alias Description ECC score Gene Family Method Actions
Kfl00044_0150 kfl00044_0150_v1.1 (at4g00830 : 128.0) RNA-binding (RRM/RBD/RNP motifs)... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Predicted GO
MF GO:0004673 protein histidine kinase activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Predicted GO
BP GO:0032259 methylation IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 210 271
IPR000504 RRM_dom 27 95
No external refs found!