Sopen05g027830

Description : rRNA-processing arch domain

Gene families : OG_42_0001297 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001297_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen05g027830
Cluster	HCCA clusters: Cluster_147

Target	Alias	Description	ECC score	Gene Family Method
Bradi1g52230	No alias	RNA helicase, ATP-dependent, SK12/DOB1 protein	0.03	Orthogroups_2024-Update
Bradi4g24170	No alias	RNA helicase, ATP-dependent, SK12/DOB1 protein	0.04	Orthogroups_2024-Update
Cre02.g117900	No alias	RNA helicase, ATP-dependent, SK12/DOB1 protein	0.02	Orthogroups_2024-Update
GRMZM2G040995	No alias	RNA helicase, ATP-dependent, SK12/DOB1 protein	0.03	Orthogroups_2024-Update
Glyma.08G361900	No alias	RNA helicase, ATP-dependent, SK12/DOB1 protein	0.03	Orthogroups_2024-Update
HORVU2Hr1G028060.16	No alias	RNA helicase component *(HEN2) of Nuclear Exosome...	0.02	Orthogroups_2024-Update
Kfl00024_0010	kfl00024_0010_v1.1	(at3g46960 : 612.0) RNA helicase, ATP-dependent,...	0.01	Orthogroups_2024-Update
Mp6g05580.1	No alias	RNA helicase component MTR4/HEN2 of Nuclear Exosome...	0.02	Orthogroups_2024-Update
PSME_00020414-RA	No alias	(at3g46960 : 409.0) RNA helicase, ATP-dependent,...	0.02	Orthogroups_2024-Update
Pp1s69_14V6	No alias	superkiller viralicidic activity 2-like 2	0.08	Orthogroups_2024-Update
Seita.4G003400.1	No alias	RNA helicase component *(MTR4) of TRAMP nucleolar...	0.06	Orthogroups_2024-Update
Sobic.010G003400.1	No alias	RNA helicase component *(MTR4) of TRAMP nucleolar...	0.08	Orthogroups_2024-Update
Solyc01g103080	No alias	ATP-dependent RNA helicase family protein (AHRD V3.3 ***...	0.04	Orthogroups_2024-Update
evm.model.tig00020723.108	No alias	(at1g59760 : 938.0) RNA helicase, ATP-dependent,...	0.06	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
MF	GO:0008144	drug binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR025696	rRNA_proc-arch_dom	530	793
IPR011545	DEAD/DEAH_box_helicase_dom	79	225
IPR012961	Ski2_C	821	991
IPR001650	Helicase_C	369	474

External Links

No external refs found!