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  5. PSME_00016280-RA

PSME_00016280-RA


Description : (p62302|rs13_soybn : 256.0) 40S ribosomal protein S13 - Glycine max (Soybean) & (at4g00100 : 248.0) Encodes a cytoplasmic ribosomal protein S13 homologue involved in early leaf development; ribosomal protein S13A (RPS13A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, trichome morphogenesis, leaf morphogenesis, cytokinesis by cell plate formation; LOCATED IN: cytosolic small ribosomal subunit, nucleolus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S13/S15, N-terminal (InterPro:IPR012606), Ribosomal protein S15 (InterPro:IPR000589), S15/NS1, RNA-binding (InterPro:IPR009068); BEST Arabidopsis thaliana protein match is: Ribosomal protein S13/S15 (TAIR:AT3G60770.1); Has 1100 Blast hits to 1100 proteins in 416 species: Archae - 259; Bacteria - 0; Metazoa - 343; Fungi - 146; Plants - 139; Viruses - 0; Other Eukaryotes - 213 (source: NCBI BLink). & (reliability: 496.0) & (original description: no original description)


Gene families : OG_42_0001410 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001410_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00016280-RA
Cluster HCCA clusters: Cluster_233

Target Alias Description ECC score Gene Family Method Actions
Brara.E00496.1 No alias component *(uS15) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Mp4g03410.1 No alias component RPS13 of SSU proteome 0.02 Orthogroups_2024-Update
Seita.6G085100.1 No alias component *(uS15) of small ribosomal-subunit (SSU) proteome 0.02 Orthogroups_2024-Update
evm.model.contig_3443.6 No alias (p62302|rs13_soybn : 220.0) 40S ribosomal protein S13 -... 0.01 Orthogroups_2024-Update
evm.model.tig00000489.15 No alias (p62302|rs13_soybn : 183.0) 40S ribosomal protein S13 -... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
InterPro domains Description Start Stop
IPR000589 Ribosomal_S15 69 128
IPR012606 Ribosomal_S13/S15_N 3 55
No external refs found!