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  5. PSME_00016386-RA

PSME_00016386-RA


Description : (at5g64270 : 466.0) splicing factor, putative; FUNCTIONS IN: binding; INVOLVED IN: mRNA processing; LOCATED IN: chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), Splicing factor 3B subunit 1 (InterPro:IPR015016), HEAT, type 2 (InterPro:IPR021133), Armadillo-type fold (InterPro:IPR016024); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 932.0) & (original description: no original description)


Gene families : OG_42_0001775 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001775_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00016386-RA
Cluster HCCA clusters: Cluster_37

Target Alias Description ECC score Gene Family Method Actions
PSME_00031698-RA No alias (at5g64270 : 358.0) splicing factor, putative; FUNCTIONS... 0.03 Orthogroups_2024-Update
PSME_00038970-RA No alias (at5g64270 : 226.0) splicing factor, putative; FUNCTIONS... 0.05 Orthogroups_2024-Update
PSME_00040929-RA No alias (at5g64270 : 242.0) splicing factor, putative; FUNCTIONS... 0.05 Orthogroups_2024-Update
PSME_00043935-RA No alias (at5g64270 : 308.0) splicing factor, putative; FUNCTIONS... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
InterPro domains Description Start Stop
IPR024746 Glyco_hydro_100 1 78
No external refs found!