PSME_00016535-RA

Description : (at3g28860 : 1775.0) Belongs to the family of ATP-binding cassette (ABC) transporters. Also known as AtMDR11 and PGP19. Possibly regulates auxin-dependent responses by influencing basipetal auxin transport in the root. Acts upstream of phyA in regulating hypocotyl elongation and gravitropic response. Exerts nonredundant, partially overlapping functions with the ABC transporter encoded by AtPGP1.; ATP binding cassette subfamily B19 (ABCB19); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, auxin efflux transmembrane transporter activity; INVOLVED IN: in 14 processes; LOCATED IN: plasma membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATP binding cassette subfamily B1 (TAIR:AT2G36910.1); Has 832220 Blast hits to 388750 proteins in 4155 species: Archae - 14331; Bacteria - 653917; Metazoa - 17455; Fungi - 11958; Plants - 9253; Viruses - 33; Other Eukaryotes - 125273 (source: NCBI BLink). & (q6yuu5|mdr_orysa : 989.0) Putative multidrug resistance protein (P-glycoprotein) - Oryza sativa (Rice) & (reliability: 3550.0) & (original description: no original description)

Gene families : OG_42_0000040 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000040_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00016535-RA
Cluster	HCCA clusters: Cluster_81

Target	Alias	Description	ECC score	Gene Family Method
230688	No alias	ATP binding cassette subfamily B19	0.04	Orthogroups_2024-Update
410515	No alias	ATP binding cassette subfamily B19	0.04	Orthogroups_2024-Update
A4A49_02254	No alias	abc transporter b family member 11	0.03	Orthogroups_2024-Update
A4A49_06562	No alias	abc transporter b family member 15	0.03	Orthogroups_2024-Update
At1g27940	No alias	PGP13 [Source:UniProtKB/TrEMBL;Acc:A0A178W4F4]	0.03	Orthogroups_2024-Update
At1g28010	No alias	ABC transporter B family member 14...	0.03	Orthogroups_2024-Update
At3g28345	No alias	ABC transporter B family member 15...	0.03	Orthogroups_2024-Update
At3g28360	No alias	ABC transporter B family member 16...	0.02	Orthogroups_2024-Update
Bradi2g47337	No alias	ATP binding cassette subfamily B4	0.03	Orthogroups_2024-Update
Bradi2g47410	No alias	ATP binding cassette subfamily B4	0.02	Orthogroups_2024-Update
Brara.G01961.1	No alias	subfamily ABCB transporter	0.02	Orthogroups_2024-Update
Glyma.10G055000	No alias	ATP binding cassette subfamily B1	0.02	Orthogroups_2024-Update
Glyma.10G137600	No alias	ATP binding cassette subfamily B4	0.03	Orthogroups_2024-Update
Glyma.17G259100	No alias	P-glycoprotein 13	0.02	Orthogroups_2024-Update
HORVU2Hr1G080200.1	No alias	auxin efflux transporter *(ABCB19) & subfamily ABCB transporter	0.03	Orthogroups_2024-Update
HORVU3Hr1G068650.8	No alias	subfamily ABCB transporter	0.03	Orthogroups_2024-Update
LOC_Os01g50100	No alias	ABC transporter, ATP-binding protein, putative, expressed	0.02	Orthogroups_2024-Update
LOC_Os02g21750	No alias	MDR-like ABC transporter, putative, expressed	0.02	Orthogroups_2024-Update
LOC_Os08g45030	No alias	multidrug resistance protein, putative, expressed	0.02	Orthogroups_2024-Update
MA_138894g0010	No alias	(at2g47000 : 1332.0) Multidrug resistance ...	0.03	Orthogroups_2024-Update
Potri.001G165000	No alias	ATP binding cassette subfamily B19	0.03	Orthogroups_2024-Update
Potri.002G019600	No alias	P-glycoprotein 13	0.03	Orthogroups_2024-Update
Potri.003G094400	No alias	P-glycoprotein 2	0.04	Orthogroups_2024-Update
Potri.014G113100	No alias	P-glycoprotein 11	0.03	Orthogroups_2024-Update
Potri.014G113500	No alias	P-glycoprotein 21	0.03	Orthogroups_2024-Update
Potri.017G074000	No alias	ABC transporter family protein	0.02	Orthogroups_2024-Update
Pp1s391_45V6	No alias	multidrug pheromone mdr abc transporter family	0.02	Orthogroups_2024-Update
Seita.1G145300.1	No alias	subfamily ABCB transporter	0.04	Orthogroups_2024-Update
Seita.5G283000.1	No alias	subfamily ABCB transporter	0.03	Orthogroups_2024-Update
Seita.5G283500.1	No alias	subfamily ABCB transporter	0.03	Orthogroups_2024-Update
Seita.5G283600.1	No alias	subfamily ABCB transporter	0.04	Orthogroups_2024-Update
Sobic.003G281400.1	No alias	subfamily ABCB transporter	0.03	Orthogroups_2024-Update
Sopen02g020400	No alias	ABC transporter transmembrane region	0.02	Orthogroups_2024-Update
Sopen04g005490	No alias	ABC transporter transmembrane region	0.05	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
MF	GO:0015405	P-P-bond-hydrolysis-driven transmembrane transporter activity	None	Extended
CC	GO:0016021	integral component of membrane	IEA	InterProScan predictions
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATPase activity	IEA	InterProScan predictions
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
CC	GO:0031224	intrinsic component of membrane	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042623	ATPase activity, coupled	None	Extended
MF	GO:0042626	ATPase activity, coupled to transmembrane movement of substances	IEA	InterProScan predictions
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043492	ATPase activity, coupled to movement of substances	None	Extended
CC	GO:0044425	membrane part	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	InterProScan predictions
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003677	DNA binding	IEP	Predicted GO
MF	GO:0003968	RNA-directed 5'-3' RNA polymerase activity	IEP	Predicted GO
MF	GO:0005509	calcium ion binding	IEP	Predicted GO
BP	GO:0006270	DNA replication initiation	IEP	Predicted GO
BP	GO:0006355	regulation of transcription, DNA-templated	IEP	Predicted GO
MF	GO:0009055	electron transfer activity	IEP	Predicted GO
BP	GO:0009889	regulation of biosynthetic process	IEP	Predicted GO
BP	GO:0010468	regulation of gene expression	IEP	Predicted GO
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	Predicted GO
MF	GO:0016620	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	IEP	Predicted GO
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Predicted GO
MF	GO:0016779	nucleotidyltransferase activity	IEP	Predicted GO
MF	GO:0016903	oxidoreductase activity, acting on the aldehyde or oxo group of donors	IEP	Predicted GO
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	Predicted GO
BP	GO:0019222	regulation of metabolic process	IEP	Predicted GO
BP	GO:0031323	regulation of cellular metabolic process	IEP	Predicted GO
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	Predicted GO
BP	GO:0050789	regulation of biological process	IEP	Predicted GO
BP	GO:0050794	regulation of cellular process	IEP	Predicted GO
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	Predicted GO
BP	GO:0051252	regulation of RNA metabolic process	IEP	Predicted GO
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	Predicted GO
BP	GO:0065007	biological regulation	IEP	Predicted GO
BP	GO:0080090	regulation of primary metabolic process	IEP	Predicted GO
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	Predicted GO
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	Predicted GO
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like	407	555
IPR003439	ABC_transporter-like	1053	1201
IPR011527	ABC1_TM_dom	64	338
IPR011527	ABC1_TM_dom	716	983

External Links

No external refs found!

PSME_00016535-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation