PSME_00016621-RA

Description : (o48557|rl17_maize : 300.0) 60S ribosomal protein L17 - Zea mays (Maize) & (at1g67430 : 293.0) Ribosomal protein L22p/L17e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L22/L17 (InterPro:IPR001063), Ribosomal protein L22/L17, eukaryotic/archaeal (InterPro:IPR005721); BEST Arabidopsis thaliana protein match is: Ribosomal protein L22p/L17e family protein (TAIR:AT1G27400.1). & (reliability: 586.0) & (original description: no original description)

Gene families : OG_42_0001801 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001801_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00016621-RA
Cluster	HCCA clusters: Cluster_26

Target	Alias	Description	ECC score	Gene Family Method
96251	No alias	Ribosomal protein L22p/L17e family protein	0.05	Orthogroups_2024-Update
Bradi3g41150	No alias	Ribosomal protein L22p/L17e family protein	0.1	Orthogroups_2024-Update
Bradi4g08667	No alias	Ribosomal protein L22p/L17e family protein	0.07	Orthogroups_2024-Update
Brara.B01721.1	No alias	component *(uL22) of large ribosomal-subunit (LSU) proteome	0.12	Orthogroups_2024-Update
Brara.G00848.1	No alias	component *(uL22) of large ribosomal-subunit (LSU) proteome	0.05	Orthogroups_2024-Update
Brara.G02572.1	No alias	component *(uL22) of large ribosomal-subunit (LSU) proteome	0.12	Orthogroups_2024-Update
Brara.H02055.1	No alias	component *(uL22) of large ribosomal-subunit (LSU) proteome	0.03	Orthogroups_2024-Update
Brara.I03016.1	No alias	component *(uL22) of large ribosomal-subunit (LSU) proteome	0.03	Orthogroups_2024-Update
Cre13.g568900	No alias	Ribosomal protein L22p/L17e family protein	0.11	Orthogroups_2024-Update
GRMZM2G126594	No alias	Ribosomal protein L22p/L17e family protein	0.02	Orthogroups_2024-Update
GRMZM2G148744	No alias	Ribosomal protein L22p/L17e family protein	0.05	Orthogroups_2024-Update
Glyma.05G146800	No alias	Ribosomal protein L22p/L17e family protein	0.06	Orthogroups_2024-Update
Glyma.08G103700	No alias	Ribosomal protein L22p/L17e family protein	0.08	Orthogroups_2024-Update
Glyma.11G249700	No alias	Ribosomal protein L22p/L17e family protein	0.06	Orthogroups_2024-Update
Glyma.18G007500	No alias	Ribosomal protein L22p/L17e family protein	0.04	Orthogroups_2024-Update
HORVU5Hr1G052280.1	No alias	component *(uL22) of large ribosomal-subunit (LSU) proteome	0.09	Orthogroups_2024-Update
HORVU7Hr1G054010.1	No alias	component *(uL22) of large ribosomal-subunit (LSU) proteome	0.05	Orthogroups_2024-Update
Kfl00006_0040	kfl00006_0040_v1.1	(at1g67430 : 219.0) Ribosomal protein L22p/L17e family...	0.06	Orthogroups_2024-Update
LOC_Os09g08430	No alias	ribosomal protein L22, putative, expressed	0.02	Orthogroups_2024-Update
MA_10430182g0010	No alias	(at1g27400 : 272.0) Ribosomal protein L22p/L17e family...	0.04	Orthogroups_2024-Update
MA_64923g0010	No alias	(o48557\|rl17_maize : 306.0) 60S ribosomal protein L17 -...	0.04	Orthogroups_2024-Update
Mp1g10230.1	No alias	component RPL17 of LSU proteome component	0.06	Orthogroups_2024-Update
Potri.012G096600	No alias	Ribosomal protein L22p/L17e family protein	0.05	Orthogroups_2024-Update
Pp1s22_76V6	No alias	60s ribosomal protein	0.04	Orthogroups_2024-Update
Pp1s364_56V6	No alias	60s ribosomal protein	0.14	Orthogroups_2024-Update
Pp1s38_376V6	No alias	60s ribosomal protein	0.06	Orthogroups_2024-Update
Pp1s97_74V6	No alias	60s ribosomal protein	0.09	Orthogroups_2024-Update
Pp1s97_78V6	No alias	60s ribosomal protein	0.1	Orthogroups_2024-Update
Seita.5G119300.1	No alias	component *(uL22) of large ribosomal-subunit (LSU) proteome	0.11	Orthogroups_2024-Update
Seita.6G112100.1	No alias	component *(uL22) of large ribosomal-subunit (LSU) proteome	0.04	Orthogroups_2024-Update
Seita.6G222100.1	No alias	component *(uL22) of large ribosomal-subunit (LSU) proteome	0.04	Orthogroups_2024-Update
Seita.7G314300.1	No alias	component *(uL22) of large ribosomal-subunit (LSU) proteome	0.14	Orthogroups_2024-Update
Seita.8G022000.1	No alias	component *(uL22) of large ribosomal-subunit (LSU) proteome	0.04	Orthogroups_2024-Update
Sobic.001G016400.1	No alias	component *(uL22) of large ribosomal-subunit (LSU) proteome	0.1	Orthogroups_2024-Update
Sobic.001G016500.1	No alias	component *(uL22) of large ribosomal-subunit (LSU) proteome	0.06	Orthogroups_2024-Update
Sobic.009G076400.1	No alias	component *(uL22) of large ribosomal-subunit (LSU) proteome	0.13	Orthogroups_2024-Update
Solyc03g111230	No alias	Ribosomal protein (AHRD V3.3 *** Q947H2_PETHY)	0.11	Orthogroups_2024-Update
Solyc06g071870	No alias	Ribosomal protein (AHRD V3.3 *** Q947H2_PETHY)	0.13	Orthogroups_2024-Update
Solyc06g071880	No alias	60S ribosomal protein L17 (AHRD V3.3 *** A0A0D3QSL6_TOBAC)	0.12	Orthogroups_2024-Update
Sopen03g030370	No alias	Ribosomal protein L22p/L17e	0.1	Orthogroups_2024-Update
Sopen06g028150	No alias	Ribosomal protein L22p/L17e	0.1	Orthogroups_2024-Update
Sopen06g028160	No alias	Ribosomal protein L22p/L17e	0.11	Orthogroups_2024-Update
evm.model.contig_2031.15	No alias	(p35267\|rl172_horvu : 178.0) 60S ribosomal protein L17-2...	0.14	Orthogroups_2024-Update
evm.model.tig00001215.8	No alias	(o48557\|rl17_maize : 230.0) 60S ribosomal protein L17 -...	0.12	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)	IEP	Predicted GO
CC	GO:0000502	proteasome complex	IEP	Predicted GO
MF	GO:0000774	adenyl-nucleotide exchange factor activity	IEP	Predicted GO
BP	GO:0001522	pseudouridine synthesis	IEP	Predicted GO
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003690	double-stranded DNA binding	IEP	Predicted GO
MF	GO:0003697	single-stranded DNA binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003746	translation elongation factor activity	IEP	Predicted GO
MF	GO:0004807	triose-phosphate isomerase activity	IEP	Predicted GO
CC	GO:0005622	intracellular	IEP	Predicted GO
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
BP	GO:0006754	ATP biosynthetic process	IEP	Predicted GO
MF	GO:0008135	translation factor activity, RNA binding	IEP	Predicted GO
MF	GO:0008324	cation transmembrane transporter activity	IEP	Predicted GO
BP	GO:0009123	nucleoside monophosphate metabolic process	IEP	Predicted GO
BP	GO:0009124	nucleoside monophosphate biosynthetic process	IEP	Predicted GO
BP	GO:0009126	purine nucleoside monophosphate metabolic process	IEP	Predicted GO
BP	GO:0009127	purine nucleoside monophosphate biosynthetic process	IEP	Predicted GO
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	Predicted GO
BP	GO:0009142	nucleoside triphosphate biosynthetic process	IEP	Predicted GO
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	Predicted GO
BP	GO:0009145	purine nucleoside triphosphate biosynthetic process	IEP	Predicted GO
BP	GO:0009152	purine ribonucleotide biosynthetic process	IEP	Predicted GO
BP	GO:0009156	ribonucleoside monophosphate biosynthetic process	IEP	Predicted GO
BP	GO:0009161	ribonucleoside monophosphate metabolic process	IEP	Predicted GO
BP	GO:0009167	purine ribonucleoside monophosphate metabolic process	IEP	Predicted GO
BP	GO:0009168	purine ribonucleoside monophosphate biosynthetic process	IEP	Predicted GO
BP	GO:0009199	ribonucleoside triphosphate metabolic process	IEP	Predicted GO
BP	GO:0009201	ribonucleoside triphosphate biosynthetic process	IEP	Predicted GO
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	IEP	Predicted GO
BP	GO:0009206	purine ribonucleoside triphosphate biosynthetic process	IEP	Predicted GO
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	Predicted GO
BP	GO:0009894	regulation of catabolic process	IEP	Predicted GO
MF	GO:0015077	monovalent inorganic cation transmembrane transporter activity	IEP	Predicted GO
MF	GO:0015078	proton transmembrane transporter activity	IEP	Predicted GO
BP	GO:0015672	monovalent inorganic cation transport	IEP	Predicted GO
CC	GO:0015934	large ribosomal subunit	IEP	Predicted GO
BP	GO:0015985	energy coupled proton transport, down electrochemical gradient	IEP	Predicted GO
BP	GO:0015986	ATP synthesis coupled proton transport	IEP	Predicted GO
BP	GO:0015988	energy coupled proton transmembrane transport, against electrochemical gradient	IEP	Predicted GO
BP	GO:0015991	ATP hydrolysis coupled proton transport	IEP	Predicted GO
MF	GO:0016853	isomerase activity	IEP	Predicted GO
MF	GO:0016872	intramolecular lyase activity	IEP	Predicted GO
MF	GO:0019829	cation-transporting ATPase activity	IEP	Predicted GO
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predicted GO
MF	GO:0022853	active ion transmembrane transporter activity	IEP	Predicted GO
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	Predicted GO
CC	GO:0033178	proton-transporting two-sector ATPase complex, catalytic domain	IEP	Predicted GO
CC	GO:0033180	proton-transporting V-type ATPase, V1 domain	IEP	Predicted GO
BP	GO:0034220	ion transmembrane transport	IEP	Predicted GO
BP	GO:0042176	regulation of protein catabolic process	IEP	Predicted GO
BP	GO:0042254	ribosome biogenesis	IEP	Predicted GO
MF	GO:0042625	ATPase coupled ion transmembrane transporter activity	IEP	Predicted GO
MF	GO:0042802	identical protein binding	IEP	Predicted GO
MF	GO:0042803	protein homodimerization activity	IEP	Predicted GO
BP	GO:0044085	cellular component biogenesis	IEP	Predicted GO
CC	GO:0044391	ribosomal subunit	IEP	Predicted GO
CC	GO:0044429	mitochondrial part	IEP	Predicted GO
CC	GO:0044455	mitochondrial membrane part	IEP	Predicted GO
MF	GO:0044769	ATPase activity, coupled to transmembrane movement of ions, rotational mechanism	IEP	Predicted GO
CC	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)	IEP	Predicted GO
BP	GO:0046034	ATP metabolic process	IEP	Predicted GO
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	Predicted GO
MF	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism	IEP	Predicted GO
MF	GO:0060590	ATPase regulator activity	IEP	Predicted GO
BP	GO:0090662	ATP hydrolysis coupled transmembrane transport	IEP	Predicted GO
BP	GO:0098655	cation transmembrane transport	IEP	Predicted GO
BP	GO:0098660	inorganic ion transmembrane transport	IEP	Predicted GO
BP	GO:0098662	inorganic cation transmembrane transport	IEP	Predicted GO
CC	GO:0098798	mitochondrial protein complex	IEP	Predicted GO
CC	GO:0098800	inner mitochondrial membrane protein complex	IEP	Predicted GO
BP	GO:0099131	ATP hydrolysis coupled ion transmembrane transport	IEP	Predicted GO
BP	GO:0099132	ATP hydrolysis coupled cation transmembrane transport	IEP	Predicted GO
BP	GO:1902600	proton transmembrane transport	IEP	Predicted GO
CC	GO:1905368	peptidase complex	IEP	Predicted GO
CC	GO:1905369	endopeptidase complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001063	Ribosomal_L22	71	206

External Links

No external refs found!

PSME_00016621-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation