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  5. PSME_00016831-RA

PSME_00016831-RA


Description : (at3g12770 : 618.0) Encodes a pentatricopeptide repeat protein (PPR) protein involved in mitochondrial mRNA editing.; mitochondrial editing factor 22 (MEF22); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G11290.1); Has 43523 Blast hits to 14475 proteins in 290 species: Archae - 0; Bacteria - 15; Metazoa - 148; Fungi - 158; Plants - 42447; Viruses - 0; Other Eukaryotes - 755 (source: NCBI BLink). & (q76c99|rf1_orysa : 110.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1236.0) & (original description: no original description)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00016831-RA
Cluster HCCA clusters: Cluster_210

Target Alias Description ECC score Gene Family Method Actions
105197 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
34426 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 Orthogroups_2024-Update
82058 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi1g36010 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi4g40340 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi4g41840 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.09G236700 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
HORVU2Hr1G081690.1 No alias RNA editing factor *(OTP86) 0.05 Orthogroups_2024-Update
MA_100287g0010 No alias (at3g12770 : 646.0) Encodes a pentatricopeptide repeat... 0.04 Orthogroups_2024-Update
MA_10429371g0010 No alias (at3g57430 : 716.0) Encodes a chloroplast RNA editing... 0.04 Orthogroups_2024-Update
MA_10430355g0010 No alias (at1g11290 : 469.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
MA_138676g0010 No alias (at3g49170 : 755.0) embryo defective 2261 (EMB2261);... 0.04 Orthogroups_2024-Update
MA_141034g0010 No alias (at4g33170 : 601.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
MA_16917g0010 No alias (at4g13650 : 578.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
MA_183278g0010 No alias (at3g12770 : 619.0) Encodes a pentatricopeptide repeat... 0.06 Orthogroups_2024-Update
MA_183738g0010 No alias (at3g12770 : 617.0) Encodes a pentatricopeptide repeat... 0.03 Orthogroups_2024-Update
MA_25729g0010 No alias (at2g22070 : 551.0) pentatricopeptide (PPR)... 0.05 Orthogroups_2024-Update
MA_36655g0010 No alias (at4g39530 : 586.0) Tetratricopeptide repeat (TPR)-like... 0.06 Orthogroups_2024-Update
MA_474261g0010 No alias (at3g12770 : 471.0) Encodes a pentatricopeptide repeat... 0.05 Orthogroups_2024-Update
MA_63139g0020 No alias (at4g13650 : 686.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
MA_658463g0010 No alias (at4g02750 : 623.0) Tetratricopeptide repeat (TPR)-like... 0.06 Orthogroups_2024-Update
MA_9354530g0010 No alias (at1g11290 : 613.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
MA_95261g0010 No alias (at1g11290 : 556.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
MA_953793g0020 No alias (at4g18750 : 600.0) Encodes a pentatricopeptide (PPR)... 0.05 Orthogroups_2024-Update
PSME_00003038-RA No alias (at1g11290 : 364.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
PSME_00052677-RA No alias (at2g13600 : 483.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
PSME_00054674-RA No alias (at4g33170 : 289.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
Solyc01g094850 No alias Pentatricopeptide repeat superfamily protein, putative... 0.02 Orthogroups_2024-Update
Sopen09g004810 No alias PPR repeat 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0007275 multicellular organism development IEP Predicted GO
BP GO:0032501 multicellular organismal process IEP Predicted GO
BP GO:0032502 developmental process IEP Predicted GO
BP GO:0048856 anatomical structure development IEP Predicted GO
InterPro domains Description Start Stop
IPR032867 DYW_dom 603 727
IPR002885 Pentatricopeptide_repeat 429 477
IPR002885 Pentatricopeptide_repeat 329 376
IPR002885 Pentatricopeptide_repeat 127 174
IPR002885 Pentatricopeptide_repeat 228 275
IPR002885 Pentatricopeptide_repeat 202 227
IPR002885 Pentatricopeptide_repeat 404 426
No external refs found!