PSME_00017023-RA

Description : (at4g23180 : 387.0) Encodes a receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307); cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (CRK10); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Protein of unknown function DUF26 (InterPro:IPR002902), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (TAIR:AT4G23160.1); Has 124145 Blast hits to 122467 proteins in 4564 species: Archae - 110; Bacteria - 14159; Metazoa - 45299; Fungi - 10862; Plants - 34986; Viruses - 473; Other Eukaryotes - 18256 (source: NCBI BLink). & (q8l4h4|nork_medtr : 202.0) Nodulation receptor kinase precursor (EC 2.7.11.1) (Does not make infections protein 2) (Symbiosis receptor-like kinase) (MtSYMRK) - Medicago truncatula (Barrel medic) & (reliability: 774.0) & (original description: no original description)

Gene families : OG_42_0000062 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000062_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00017023-RA
Cluster	HCCA clusters: Cluster_104

Target	Alias	Description	ECC score	Gene Family Method
27379	No alias	Leucine-rich repeat transmembrane protein kinase	0.02	Orthogroups_2024-Update
91600	No alias	Leucine-rich repeat transmembrane protein kinase	0.02	Orthogroups_2024-Update
At3g45860	No alias	Cysteine-rich receptor-like protein kinase 4...	0.02	Orthogroups_2024-Update
At4g21410	No alias	Cysteine-rich receptor-like protein kinase 29...	0.03	Orthogroups_2024-Update
At4g23150	No alias	Cysteine-rich receptor-like protein kinase 7...	0.02	Orthogroups_2024-Update
Bradi1g25552	No alias	cysteine-rich RLK (RECEPTOR-like protein kinase) 10	0.03	Orthogroups_2024-Update
Brara.K01832.1	No alias	DUF26 protein kinase & EC_2.7 transferase transferring...	0.04	Orthogroups_2024-Update
GRMZM2G010892	No alias	cysteine-rich RLK (RECEPTOR-like protein kinase) 10	0.03	Orthogroups_2024-Update
GRMZM2G140721	No alias	cysteine-rich RLK (RECEPTOR-like protein kinase) 25	0.02	Orthogroups_2024-Update
Glyma.20G139700	No alias	cysteine-rich RLK (RECEPTOR-like protein kinase) 25	0.03	Orthogroups_2024-Update
Glyma.20G139900	No alias	cysteine-rich RLK (RECEPTOR-like protein kinase) 10	0.03	Orthogroups_2024-Update
HORVU2Hr1G044640.4	No alias	EC_2.7 transferase transferring phosphorus-containing group	0.03	Orthogroups_2024-Update
LOC_Os07g35280	No alias	TKL_IRAK_DUF26-lc.1 - DUF26 kinases have homology to...	0.02	Orthogroups_2024-Update
LOC_Os07g35310	No alias	TKL_IRAK_DUF26-lc.12 - DUF26 kinases have homology to...	0.03	Orthogroups_2024-Update
LOC_Os07g35370	No alias	TKL_IRAK_DUF26-lc.15 - DUF26 kinases have homology to...	0.02	Orthogroups_2024-Update
LOC_Os07g35390	No alias	TKL_IRAK_DUF26-lc.17 - DUF26 kinases have homology to...	0.03	Orthogroups_2024-Update
LOC_Os07g35810	No alias	TKL_IRAK_DUF26-ld.6 - DUF26 kinases have homology to...	0.02	Orthogroups_2024-Update
LOC_Os07g43570	No alias	TKL_IRAK_DUF26-lc.25 - DUF26 kinases have homology to...	0.02	Orthogroups_2024-Update
MA_10237752g0010	No alias	(at4g23180 : 428.0) Encodes a receptor-like protein...	0.04	Orthogroups_2024-Update
MA_10426030g0040	No alias	no hits & (original description: no original description)	0.03	Orthogroups_2024-Update
MA_10432964g0020	No alias	(at4g23180 : 306.0) Encodes a receptor-like protein...	0.03	Orthogroups_2024-Update
MA_10434478g0010	No alias	(at4g21390 : 307.0) B120; FUNCTIONS IN: protein...	0.04	Orthogroups_2024-Update
MA_18132g0010	No alias	(at4g23180 : 295.0) Encodes a receptor-like protein...	0.04	Orthogroups_2024-Update
MA_212168g0010	No alias	(at4g23190 : 290.0) Encodes putative receptor-like...	0.03	Orthogroups_2024-Update
MA_3721g0010	No alias	(at4g23180 : 411.0) Encodes a receptor-like protein...	0.03	Orthogroups_2024-Update
MA_426743g0010	No alias	(at1g61480 : 229.0) S-locus lectin protein kinase family...	0.05	Orthogroups_2024-Update
PSME_00001401-RA	No alias	(at4g23140 : 426.0) Arabidopsis thaliana receptor-like...	0.06	Orthogroups_2024-Update
PSME_00001402-RA	No alias	(at4g23280 : 388.0) Encodes a cysteine-rich...	0.12	Orthogroups_2024-Update
PSME_00002853-RA	No alias	(at4g23180 : 226.0) Encodes a receptor-like protein...	0.03	Orthogroups_2024-Update
PSME_00007418-RA	No alias	(at4g23180 : 192.0) Encodes a receptor-like protein...	0.04	Orthogroups_2024-Update
PSME_00008092-RA	No alias	(at1g11350 : 259.0) S-domain-1 13 (SD1-13); CONTAINS...	0.04	Orthogroups_2024-Update
PSME_00011852-RA	No alias	(at4g23160 : 350.0) Encodes a cysteine-rich...	0.03	Orthogroups_2024-Update
PSME_00012848-RA	No alias	(at4g23250 : 424.0) EMBRYO DEFECTIVE 1290 (EMB1290);...	0.04	Orthogroups_2024-Update
PSME_00015154-RA	No alias	(at4g23180 : 417.0) Encodes a receptor-like protein...	0.04	Orthogroups_2024-Update
PSME_00015346-RA	No alias	(at4g23180 : 367.0) Encodes a receptor-like protein...	0.06	Orthogroups_2024-Update
PSME_00027691-RA	No alias	(at4g23180 : 398.0) Encodes a receptor-like protein...	0.06	Orthogroups_2024-Update
PSME_00038664-RA	No alias	(at4g23140 : 397.0) Arabidopsis thaliana receptor-like...	0.04	Orthogroups_2024-Update
PSME_00039295-RA	No alias	(at4g23160 : 364.0) Encodes a cysteine-rich...	0.03	Orthogroups_2024-Update
PSME_00040936-RA	No alias	(at4g23180 : 409.0) Encodes a receptor-like protein...	0.05	Orthogroups_2024-Update
PSME_00043553-RA	No alias	(at4g23180 : 435.0) Encodes a receptor-like protein...	0.04	Orthogroups_2024-Update
PSME_00044023-RA	No alias	(at4g23180 : 425.0) Encodes a receptor-like protein...	0.04	Orthogroups_2024-Update
PSME_00044295-RA	No alias	(at4g23180 : 407.0) Encodes a receptor-like protein...	0.04	Orthogroups_2024-Update
PSME_00044921-RA	No alias	no hits & (original description: no original description)	0.05	Orthogroups_2024-Update
PSME_00046993-RA	No alias	(at4g23180 : 277.0) Encodes a receptor-like protein...	0.04	Orthogroups_2024-Update
Potri.004G025650	No alias	cysteine-rich RLK (RECEPTOR-like protein kinase) 10	0.02	Orthogroups_2024-Update
Potri.004G026350	No alias	cysteine-rich RLK (RECEPTOR-like protein kinase) 29	0.04	Orthogroups_2024-Update
Seita.5G086900.1	No alias	EC_2.7 transferase transferring phosphorus-containing group	0.03	Orthogroups_2024-Update
Solyc04g077330	No alias	Serine/threonine-protein kinase (AHRD V3.3 - M1A1I5_SOLTU)	0.02	Orthogroups_2024-Update
Sopen02g024790	No alias	Protein tyrosine kinase	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004672	protein kinase activity	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006468	protein phosphorylation	IEA	InterProScan predictions
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016301	kinase activity	None	Extended
BP	GO:0016310	phosphorylation	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0036211	protein modification process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Predicted GO
MF	GO:0005515	protein binding	IEP	Predicted GO
BP	GO:0006355	regulation of transcription, DNA-templated	IEP	Predicted GO
MF	GO:0008173	RNA methyltransferase activity	IEP	Predicted GO
BP	GO:0009889	regulation of biosynthetic process	IEP	Predicted GO
BP	GO:0010468	regulation of gene expression	IEP	Predicted GO
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	Predicted GO
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	Predicted GO
BP	GO:0031323	regulation of cellular metabolic process	IEP	Predicted GO
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	Predicted GO
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	Predicted GO
BP	GO:0051252	regulation of RNA metabolic process	IEP	Predicted GO
BP	GO:0080090	regulation of primary metabolic process	IEP	Predicted GO
MF	GO:0140110	transcription regulator activity	IEP	Predicted GO
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	Predicted GO
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	Predicted GO
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000719	Prot_kinase_dom	349	550
IPR002902	GNK2	164	257
IPR002902	GNK2	45	142

External Links

No external refs found!

PSME_00017023-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation