1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00017099-RA

PSME_00017099-RA


Description : (at1g27170 : 240.0) transmembrane receptors;ATP binding; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT1G27180.1); Has 88149 Blast hits to 36022 proteins in 1268 species: Archae - 44; Bacteria - 5525; Metazoa - 17765; Fungi - 1406; Plants - 58458; Viruses - 8; Other Eukaryotes - 4943 (source: NCBI BLink). & (reliability: 480.0) & (original description: no original description)


Gene families : OG_42_0000010 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00017099-RA
Cluster HCCA clusters: Cluster_209

Target Alias Description ECC score Gene Family Method Actions
A4A49_18482 No alias tmv resistance protein n 0.02 Orthogroups_2024-Update
At1g72920 No alias Similar to part of disease resistance protein... 0.04 Orthogroups_2024-Update
Brara.B02529.1 No alias effector receptor *(NLR) 0.02 Orthogroups_2024-Update
Glyma.02G041800 No alias disease resistance protein (TIR-NBS-LRR class), putative 0.02 Orthogroups_2024-Update
Glyma.04G219566 No alias Disease resistance protein (TIR-NBS-LRR class) family 0.03 Orthogroups_2024-Update
Glyma.12G132400 No alias disease resistance protein (TIR-NBS-LRR class), putative 0.03 Orthogroups_2024-Update
Glyma.14G048600 No alias disease resistance protein (TIR-NBS-LRR class), putative 0.03 Orthogroups_2024-Update
Glyma.18G116601 No alias Disease resistance protein (TIR-NBS-LRR class) family 0.02 Orthogroups_2024-Update
Glyma.19G054700 No alias Disease resistance protein (TIR-NBS-LRR class) family 0.03 Orthogroups_2024-Update
MA_10427441g0010 No alias (at5g36930 : 94.0) Disease resistance protein... 0.03 Orthogroups_2024-Update
Potri.011G011900 No alias Disease resistance protein (TIR-NBS-LRR class) family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
BP GO:0007165 signal transduction IEA InterProScan predictions
MF GO:0043531 ADP binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0004133 glycogen debranching enzyme activity IEP Predicted GO
MF GO:0004134 4-alpha-glucanotransferase activity IEP Predicted GO
MF GO:0004674 protein serine/threonine kinase activity IEP Predicted GO
BP GO:0008037 cell recognition IEP Predicted GO
MF GO:0008061 chitin binding IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016746 transferase activity, transferring acyl groups IEP Predicted GO
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Predicted GO
MF GO:0016866 intramolecular transferase activity IEP Predicted GO
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Predicted GO
BP GO:0022414 reproductive process IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
BP GO:0048544 recognition of pollen IEP Predicted GO
MF GO:0051536 iron-sulfur cluster binding IEP Predicted GO
MF GO:0051540 metal cluster binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002182 NB-ARC 149 381
IPR000157 TIR_dom 3 161
No external refs found!