PSME_00017144-RA

Description : (at5g10980 : 144.0) Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleosome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT4G40030.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p08437|h3_volca : 144.0) Histone H3 - Volvox carteri & (reliability: 288.0) & (original description: no original description)

Gene families : OG_42_0000090 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000090_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00017144-RA
Cluster	HCCA clusters: Cluster_236

Target	Alias	Description	ECC score	Gene Family Method
At5g10400	No alias	Histone H3 [Source:UniProtKB/TrEMBL;Acc:A0A178WG20]	0.02	Orthogroups_2024-Update
At5g65360	No alias	Histone H3 [Source:UniProtKB/TrEMBL;Acc:A0A178WG20]	0.02	Orthogroups_2024-Update
Cre06.g264650	No alias	Histone superfamily protein	0.02	Orthogroups_2024-Update
Cre06.g274000	No alias	Histone superfamily protein	0.03	Orthogroups_2024-Update
Cre06.g276850	No alias	Histone superfamily protein	0.03	Orthogroups_2024-Update
Cre12.g504650	No alias	Histone superfamily protein	0.03	Orthogroups_2024-Update
Cre12.g506300	No alias	Histone superfamily protein	0.03	Orthogroups_2024-Update
Cre12.g506500	No alias	Histone superfamily protein	0.03	Orthogroups_2024-Update
Cre17.g708150	No alias	Histone superfamily protein	0.02	Orthogroups_2024-Update
Cre17.g708700	No alias	Histone superfamily protein	0.02	Orthogroups_2024-Update
Cre17.g709050	No alias	Histone superfamily protein	0.03	Orthogroups_2024-Update
Glyma.05G188700	No alias	Histone superfamily protein	0.03	Orthogroups_2024-Update
Glyma.11G130900	No alias	Histone superfamily protein	0.03	Orthogroups_2024-Update
Glyma.15G222200	No alias	Histone superfamily protein	0.03	Orthogroups_2024-Update
Glyma.17G176600	No alias	Histone superfamily protein	0.02	Orthogroups_2024-Update
HORVU1Hr1G058490.4	No alias	histone *(H3)	0.03	Orthogroups_2024-Update
HORVU7Hr1G012820.2	No alias	histone *(H3)	0.02	Orthogroups_2024-Update
LOC_Os04g34240	No alias	histone H3, putative, expressed	0.02	Orthogroups_2024-Update
MA_24261g0010	No alias	(at5g10980 : 255.0) Histone superfamily protein;...	0.03	Orthogroups_2024-Update
PSME_00010790-RA	No alias	(at5g65360 : 186.0) Histone superfamily protein;...	0.04	Orthogroups_2024-Update
PSME_00015728-RA	No alias	(at5g65360 : 167.0) Histone superfamily protein;...	0.03	Orthogroups_2024-Update
PSME_00020261-RA	No alias	(at5g10980 : 95.9) Histone superfamily protein;...	0.06	Orthogroups_2024-Update
PSME_00032395-RA	No alias	(at5g10980 : 95.1) Histone superfamily protein;...	0.03	Orthogroups_2024-Update
Seita.3G198000.1	No alias	histone H3 variant *(CENH3)	0.03	Orthogroups_2024-Update
Seita.3G227400.1	No alias	histone *(H3)	0.05	Orthogroups_2024-Update
Seita.7G095500.1	No alias	histone *(H3)	0.03	Orthogroups_2024-Update
Solyc01g074000	No alias	Histone H3 (AHRD V3.3 *** A0A0E0P928_ORYRU)	0.02	Orthogroups_2024-Update
Solyc01g080600	No alias	Histone H3 (AHRD V3.3 *** A0A068VC55_COFCA)	0.02	Orthogroups_2024-Update
Sopen10g004700	No alias	Core histone H2A/H2B/H3/H4	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEA	InterProScan predictions
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044427	chromosomal part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
CC	GO:0044815	DNA packaging complex	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005215	transporter activity	IEP	Predicted GO
BP	GO:0006811	ion transport	IEP	Predicted GO
BP	GO:0006812	cation transport	IEP	Predicted GO
MF	GO:0008324	cation transmembrane transporter activity	IEP	Predicted GO
MF	GO:0008519	ammonium transmembrane transporter activity	IEP	Predicted GO
BP	GO:0009892	negative regulation of metabolic process	IEP	Predicted GO
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	Predicted GO
BP	GO:0010629	negative regulation of gene expression	IEP	Predicted GO
MF	GO:0015075	ion transmembrane transporter activity	IEP	Predicted GO
BP	GO:0015696	ammonium transport	IEP	Predicted GO
BP	GO:0016458	gene silencing	IEP	Predicted GO
MF	GO:0016740	transferase activity	IEP	Predicted GO
MF	GO:0022857	transmembrane transporter activity	IEP	Predicted GO
BP	GO:0031047	gene silencing by RNA	IEP	Predicted GO
BP	GO:0048519	negative regulation of biological process	IEP	Predicted GO
BP	GO:0071705	nitrogen compound transport	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR007125	Histone_H2A/H2B/H3	3	92

External Links

No external refs found!

PSME_00017144-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation