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  5. PSME_00017380-RA

PSME_00017380-RA


Description : (at2g27610 : 683.0) Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G13650.1); Has 54594 Blast hits to 14874 proteins in 305 species: Archae - 2; Bacteria - 30; Metazoa - 158; Fungi - 263; Plants - 53396; Viruses - 0; Other Eukaryotes - 745 (source: NCBI BLink). & (q76c99|rf1_orysa : 134.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1366.0) & (original description: no original description)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00017380-RA
Cluster HCCA clusters: Cluster_210

Target Alias Description ECC score Gene Family Method Actions
150748 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
A4A49_26813 No alias putative pentatricopeptide repeat-containing protein,... 0.04 Orthogroups_2024-Update
At3g09040 No alias Pentatricopeptide repeat (PPR) superfamily protein... 0.03 Orthogroups_2024-Update
Bradi1g36010 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Bradi3g20480 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.02G160400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
MA_100287g0010 No alias (at3g12770 : 646.0) Encodes a pentatricopeptide repeat... 0.04 Orthogroups_2024-Update
MA_10429371g0010 No alias (at3g57430 : 716.0) Encodes a chloroplast RNA editing... 0.04 Orthogroups_2024-Update
MA_3471g0010 No alias (at4g13650 : 601.0) Pentatricopeptide repeat (PPR)... 0.06 Orthogroups_2024-Update
MA_36655g0010 No alias (at4g39530 : 586.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
MA_440697g0010 No alias (at4g18750 : 611.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
MA_474261g0010 No alias (at3g12770 : 471.0) Encodes a pentatricopeptide repeat... 0.04 Orthogroups_2024-Update
Pp1s183_52V6 No alias hypothetical protein [Oryza sativa (japonica cultivar-group)] 0.02 Orthogroups_2024-Update
Pp1s276_42V6 No alias F4I10.100; pentatricopeptide (PPR) repeat-containing... 0.04 Orthogroups_2024-Update
Sobic.007G187600.1 No alias processivity component *(REV7) of DNA polymerase zeta complex 0.02 Orthogroups_2024-Update
Sobic.009G250700.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP Predicted GO
BP GO:0002100 tRNA wobble adenosine to inosine editing IEP Predicted GO
MF GO:0004000 adenosine deaminase activity IEP Predicted GO
MF GO:0004176 ATP-dependent peptidase activity IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
MF GO:0004497 monooxygenase activity IEP Predicted GO
MF GO:0004506 squalene monooxygenase activity IEP Predicted GO
BP GO:0006382 adenosine to inosine editing IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
MF GO:0008251 tRNA-specific adenosine deaminase activity IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
BP GO:0016553 base conversion or substitution editing IEP Predicted GO
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Predicted GO
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Predicted GO
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Predicted GO
MF GO:0019239 deaminase activity IEP Predicted GO
MF GO:0019842 vitamin binding IEP Predicted GO
MF GO:0030170 pyridoxal phosphate binding IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
MF GO:0070279 vitamin B6 binding IEP Predicted GO
InterPro domains Description Start Stop
IPR032867 DYW_dom 791 914
IPR002885 Pentatricopeptide_repeat 618 664
IPR002885 Pentatricopeptide_repeat 517 564
IPR002885 Pentatricopeptide_repeat 113 160
IPR002885 Pentatricopeptide_repeat 213 260
IPR002885 Pentatricopeptide_repeat 416 463
IPR002885 Pentatricopeptide_repeat 762 787
IPR002885 Pentatricopeptide_repeat 491 516
IPR002885 Pentatricopeptide_repeat 693 716
IPR002885 Pentatricopeptide_repeat 287 315
IPR002885 Pentatricopeptide_repeat 392 413
No external refs found!