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  5. PSME_00017521-RA

PSME_00017521-RA


Description : (at4g03210 : 345.0) encodes a member of xyloglucan endotransglucosylase/hydrolases (XTHs) that catalyze the cleavage and molecular grafting of xyloglucan chains function in loosening and rearrangement of the cell wall. Gene is expressed in shoot apex region, flower buds, flower stalks and internodes bearing flowers.; xyloglucan endotransglucosylase/hydrolase 9 (XTH9); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: apoplast, cell wall; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Beta-glucanase (InterPro:IPR008264), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 5 (TAIR:AT5G13870.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q39857|xth_soybn : 310.0) Probable xyloglucan endotransglucosylase/hydrolase precursor (EC 2.4.1.207) (Fragment) - Glycine max (Soybean) & (reliability: 690.0) & (original description: no original description)


Gene families : OG_42_0000032 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000032_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00017521-RA
Cluster HCCA clusters: Cluster_151

Target Alias Description ECC score Gene Family Method Actions
A4A49_15625 No alias xyloglucan endotransglucosylasehydrolase 1 0.03 Orthogroups_2024-Update
At4g13080 No alias xyloglucan endotransglucosylase/hydrolase 1... 0.04 Orthogroups_2024-Update
At4g37800 No alias Probable xyloglucan endotransglucosylase/hydrolase... 0.03 Orthogroups_2024-Update
GRMZM5G886185 No alias xyloglucan endotransglucosylase/hydrolase 12 0.03 Orthogroups_2024-Update
Glyma.03G184500 No alias xyloglucan endotransglucosylase/hydrolase 32 0.03 Orthogroups_2024-Update
Glyma.08G107300 No alias xyloglucan endotransglucosylase/hydrolase 16 0.03 Orthogroups_2024-Update
Glyma.11G253900 No alias xyloglucan endotransglucosylase/hydrolase 16 0.02 Orthogroups_2024-Update
HORVU7Hr1G098260.1 No alias EC_2.4 glycosyltransferase 0.02 Orthogroups_2024-Update
Mp2g18350.1 No alias Enzyme classification.EC_2 transferases.EC_2.4... 0.02 Orthogroups_2024-Update
PSME_00017708-RA No alias (at4g03210 : 291.0) encodes a member of xyloglucan... 0.03 Orthogroups_2024-Update
PSME_00019699-RA No alias (q39857|xth_soybn : 456.0) Probable xyloglucan... 0.03 Orthogroups_2024-Update
PSME_00022999-RA No alias (at5g57530 : 289.0) xyloglucan... 0.05 Orthogroups_2024-Update
PSME_00045375-RA No alias (p93349|xth_tobac : 273.0) Probable xyloglucan... 0.03 Orthogroups_2024-Update
Potri.006G169900 No alias xyloglucan endotransglycosylase 6 0.03 Orthogroups_2024-Update
Seita.4G246100.1 No alias EC_2.4 glycosyltransferase 0.03 Orthogroups_2024-Update
Solyc01g099630 No alias xyloglucan endotransglucosylase-hydrolase 1 0.03 Orthogroups_2024-Update
Sopen01g027910 No alias Glycosyl hydrolases family 16 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA InterProScan predictions
CC GO:0005618 cell wall IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
BP GO:0006073 cellular glucan metabolic process IEA InterProScan predictions
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEA InterProScan predictions
CC GO:0048046 apoplast IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004144 diacylglycerol O-acyltransferase activity IEP Predicted GO
BP GO:0006631 fatty acid metabolic process IEP Predicted GO
BP GO:0006633 fatty acid biosynthetic process IEP Predicted GO
BP GO:0008610 lipid biosynthetic process IEP Predicted GO
BP GO:0009116 nucleoside metabolic process IEP Predicted GO
MF GO:0016411 acylglycerol O-acyltransferase activity IEP Predicted GO
MF GO:0016746 transferase activity, transferring acyl groups IEP Predicted GO
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Predicted GO
MF GO:0016866 intramolecular transferase activity IEP Predicted GO
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Predicted GO
BP GO:0044255 cellular lipid metabolic process IEP Predicted GO
BP GO:0045017 glycerolipid biosynthetic process IEP Predicted GO
BP GO:1901657 glycosyl compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000757 GH16 28 205
IPR010713 XET_C 231 278
No external refs found!