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  5. PSME_00017592-RA

PSME_00017592-RA


Description : no hits & (original description: no original description)


Gene families : OG_42_0000435 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000435_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00017592-RA
Cluster HCCA clusters: Cluster_283

Target Alias Description ECC score Gene Family Method Actions
Brara.H01082.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Glyma.09G149900 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 Orthogroups_2024-Update
Glyma.09G150000 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Glyma.15G075000 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Glyma.20G152900 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
PSME_00012478-RA No alias (at4g25410 : 87.4) basic helix-loop-helix (bHLH)... 0.05 Orthogroups_2024-Update
PSME_00012479-RA No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update
PSME_00019999-RA No alias no hits & (original description: no original description) 0.05 Orthogroups_2024-Update
PSME_00029446-RA No alias (at1g12540 : 86.7) basic helix-loop-helix (bHLH)... 0.05 Orthogroups_2024-Update
PSME_00047140-RA No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
Sobic.003G102200.1 No alias Unknown function 0.01 Orthogroups_2024-Update
Solyc03g006910 No alias bHLH transcription factor 019 0.02 Orthogroups_2024-Update
Solyc06g035490 No alias bHLH transcription factor 042 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0004057 arginyltransferase activity IEP Predicted GO
MF GO:0004673 protein histidine kinase activity IEP Predicted GO
BP GO:0006020 inositol metabolic process IEP Predicted GO
BP GO:0006066 alcohol metabolic process IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006721 terpenoid metabolic process IEP Predicted GO
MF GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity IEP Predicted GO
BP GO:0016114 terpenoid biosynthetic process IEP Predicted GO
BP GO:0016598 protein arginylation IEP Predicted GO
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Predicted GO
MF GO:0016744 transferase activity, transferring aldehyde or ketonic groups IEP Predicted GO
MF GO:0016755 transferase activity, transferring amino-acyl groups IEP Predicted GO
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0016831 carboxy-lyase activity IEP Predicted GO
BP GO:0019310 inositol catabolic process IEP Predicted GO
BP GO:0019751 polyol metabolic process IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0044275 cellular carbohydrate catabolic process IEP Predicted GO
BP GO:0046164 alcohol catabolic process IEP Predicted GO
BP GO:0046174 polyol catabolic process IEP Predicted GO
MF GO:0050113 inositol oxygenase activity IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
BP GO:1901616 organic hydroxy compound catabolic process IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!