1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00017701-RA

PSME_00017701-RA


Description : (at4g16370 : 263.0) Encodes an oligopeptide transporter involved in metal homeostasis.; oligopeptide transporter (OPT3); CONTAINS InterPro DOMAIN/s: Tetrapeptide transporter, OPT1/isp4 (InterPro:IPR004648), Oligopeptide transporter OPT superfamily (InterPro:IPR004813); BEST Arabidopsis thaliana protein match is: oligopeptide transporter 2 (TAIR:AT1G09930.1); Has 1146 Blast hits to 1125 proteins in 109 species: Archae - 0; Bacteria - 26; Metazoa - 0; Fungi - 775; Plants - 337; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). & (reliability: 526.0) & (original description: no original description)


Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00017701-RA
Cluster HCCA clusters: Cluster_33

Target Alias Description ECC score Gene Family Method Actions
A4A49_28929 No alias agamous-like mads-box protein agl8 0.03 Orthogroups_2024-Update
A4A49_29655 No alias floral homeotic protein globosa 0.03 Orthogroups_2024-Update
At1g77980 No alias Agamous-like MADS-box protein AGL66... 0.03 Orthogroups_2024-Update
At2g34440 No alias AGL29 [Source:UniProtKB/TrEMBL;Acc:A0A178VU29] 0.02 Orthogroups_2024-Update
At5g51860 No alias MADS-box protein AGL72 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLH5] 0.02 Orthogroups_2024-Update
Bradi2g06330 No alias K-box region and MADS-box transcription factor family protein 0.02 Orthogroups_2024-Update
Bradi2g24940 No alias K-box region and MADS-box transcription factor family protein 0.02 Orthogroups_2024-Update
Bradi4g34680 No alias K-box region and MADS-box transcription factor family protein 0.03 Orthogroups_2024-Update
Brara.E00310.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
Brara.I00639.1 No alias regulatory protein *(AP1/CAL/FUL) of floral meristem... 0.03 Orthogroups_2024-Update
GRMZM2G171365 No alias AGAMOUS-like 20 0.02 Orthogroups_2024-Update
Glyma.08G282500 No alias AGAMOUS-like 29 0.03 Orthogroups_2024-Update
HORVU0Hr1G003020.3 No alias regulatory protein *(AP1/CAL/FUL) of floral meristem... 0.02 Orthogroups_2024-Update
HORVU5Hr1G110470.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
LOC_Os02g36924 No alias OsMADS27 - MADS-box family gene with MIKCc type-box, expressed 0.03 Orthogroups_2024-Update
PSME_00013164-RA No alias (at4g11880 : 108.0) AGL12, AGL14, and AGL17 are all... 0.03 Orthogroups_2024-Update
Potri.001G284301 No alias AGAMOUS-like 21 0.02 Orthogroups_2024-Update
Potri.002G079000 No alias K-box region and MADS-box transcription factor family protein 0.02 Orthogroups_2024-Update
Potri.010G154100 No alias K-box region and MADS-box transcription factor family protein 0.02 Orthogroups_2024-Update
Potri.015G098400 No alias AGAMOUS-like 19 0.03 Orthogroups_2024-Update
Sobic.001G086500.1 No alias regulatory protein *(AP1/CAL/FUL) of floral meristem... 0.02 Orthogroups_2024-Update
Sobic.009G102200.2 No alias MADS/AGL-type transcription factor 0.01 Orthogroups_2024-Update
Sopen01g049040 No alias SRF-type transcription factor (DNA-binding and... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0046983 protein dimerization activity IEA InterProScan predictions
BP GO:0055085 transmembrane transport IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003678 DNA helicase activity IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0004421 hydroxymethylglutaryl-CoA synthase activity IEP Predicted GO
MF GO:0004427 inorganic diphosphatase activity IEP Predicted GO
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
MF GO:0009055 electron transfer activity IEP Predicted GO
MF GO:0009678 hydrogen-translocating pyrophosphatase activity IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Predicted GO
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0032200 telomere organization IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
MF GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer IEP Predicted GO
BP GO:0060249 anatomical structure homeostasis IEP Predicted GO
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
InterPro domains Description Start Stop
IPR004813 OPT 135 304
IPR002100 TF_MADSbox 10 42
No external refs found!