1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00017705-RA

PSME_00017705-RA


Description : (at4g17090 : 655.0) Encodes a beta-amylase targeted to the chloroplast. Transgenic BMY8 RNAi lines fail to accumulate maltose during cold shock suggesting that maltose accumulation coincides with BMY8 expression. Apart from maltose, the sugar content of the RNAi lines were similar to wildtype (glucose and sucrose unaffected).; chloroplast beta-amylase (CT-BMY); CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 14, conserved site (InterPro:IPR018238), Glycoside hydrolase, family 14 (InterPro:IPR001554), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 14B, plant (InterPro:IPR001371), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-amylase 1 (TAIR:AT3G23920.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (o22585|amyb_medsa : 453.0) Beta-amylase (EC 3.2.1.2) (1,4-alpha-D-glucan maltohydrolase) - Medicago sativa (Alfalfa) & (reliability: 1310.0) & (original description: no original description)


Gene families : OG_42_0000277 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000277_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00017705-RA
Cluster HCCA clusters: Cluster_145

Target Alias Description ECC score Gene Family Method Actions
419538 No alias beta-amylase 2 0.04 Orthogroups_2024-Update
A4A49_09217 No alias beta-amylase 3, chloroplastic 0.02 Orthogroups_2024-Update
At2g32290 No alias Beta-amylase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8L762] 0.03 Orthogroups_2024-Update
At5g18670 No alias Inactive beta-amylase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYW2] 0.02 Orthogroups_2024-Update
Bradi2g08187 No alias chloroplast beta-amylase 0.03 Orthogroups_2024-Update
Bradi3g33730 No alias chloroplast beta-amylase 0.02 Orthogroups_2024-Update
Brara.C00838.1 No alias beta amylase & EC_3.2 glycosylase 0.02 Orthogroups_2024-Update
Brara.H00800.1 No alias EC_3.2 glycosylase & beta amylase 0.03 Orthogroups_2024-Update
GRMZM2G077202 No alias chloroplast beta-amylase 0.04 Orthogroups_2024-Update
Glyma.01G151800 No alias beta-amylase 2 0.04 Orthogroups_2024-Update
Glyma.11G039400 No alias chloroplast beta-amylase 0.04 Orthogroups_2024-Update
Glyma.12G102900 No alias beta-amylase 5 0.04 Orthogroups_2024-Update
Glyma.12G197100 No alias beta-amylase 6 0.03 Orthogroups_2024-Update
Glyma.13G215000 No alias beta-amylase 3 0.04 Orthogroups_2024-Update
Glyma.13G305300 No alias beta-amylase 6 0.04 Orthogroups_2024-Update
Glyma.15G098100 No alias beta-amylase 3 0.03 Orthogroups_2024-Update
Glyma.17G150100 No alias chloroplast beta-amylase 0.02 Orthogroups_2024-Update
HORVU2Hr1G043920.3 No alias EC_3.2 glycosylase & beta amylase 0.03 Orthogroups_2024-Update
Kfl00337_0020 kfl00337_0020_v1.1 (o22585|amyb_medsa : 538.0) Beta-amylase (EC 3.2.1.2)... 0.03 Orthogroups_2024-Update
LOC_Os07g35880 No alias beta-amylase, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os10g32810 No alias beta-amylase, putative, expressed 0.02 Orthogroups_2024-Update
MA_124514g0010 No alias (at3g23920 : 732.0) Encodes a chloroplast beta-amylase.... 0.04 Orthogroups_2024-Update
PSME_00015611-RA No alias (at4g17090 : 549.0) Encodes a beta-amylase targeted to... 0.03 Orthogroups_2024-Update
PSME_00048762-RA No alias (at3g23920 : 741.0) Encodes a chloroplast beta-amylase.... 0.05 Orthogroups_2024-Update
Potri.008G174100 No alias beta-amylase 1 0.02 Orthogroups_2024-Update
Pp1s9_318V6 No alias beta-amylase 0.02 Orthogroups_2024-Update
Seita.2G134700.1 No alias beta amylase & EC_3.2 glycosylase & BZR-type transcription factor 0.03 Orthogroups_2024-Update
Seita.9G229700.1 No alias EC_3.2 glycosylase & beta amylase 0.04 Orthogroups_2024-Update
Sobic.001G226600.2 No alias EC_3.2 glycosylase & beta amylase 0.04 Orthogroups_2024-Update
Sobic.001G508800.1 No alias EC_3.2 glycosylase & beta amylase 0.03 Orthogroups_2024-Update
Solyc01g067660 No alias 1,4-alpha-glucan-maltohydrolase 0.03 Orthogroups_2024-Update
Solyc07g052690 No alias Beta-amylase (AHRD V3.3 *-* K4CFG8_SOLLC) 0.02 Orthogroups_2024-Update
Sopen01g029610 No alias Glycosyl hydrolase family 14 0.02 Orthogroups_2024-Update
Sopen09g034010 No alias Glycosyl hydrolase family 14 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEA InterProScan predictions
MF GO:0016161 beta-amylase activity IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0004664 prephenate dehydratase activity IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
MF GO:0004721 phosphoprotein phosphatase activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006558 L-phenylalanine metabolic process IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
BP GO:0008037 cell recognition IEP Predicted GO
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
BP GO:0009072 aromatic amino acid family metabolic process IEP Predicted GO
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Predicted GO
BP GO:0009094 L-phenylalanine biosynthetic process IEP Predicted GO
BP GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
BP GO:0016311 dephosphorylation IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0016836 hydro-lyase activity IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
BP GO:0022414 reproductive process IEP Predicted GO
MF GO:0030246 carbohydrate binding IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0048544 recognition of pollen IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process IEP Predicted GO
BP GO:1902223 erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001554 Glyco_hydro_14 96 525
No external refs found!