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  5. PSME_00017708-RA

PSME_00017708-RA


Description : (at4g03210 : 291.0) encodes a member of xyloglucan endotransglucosylase/hydrolases (XTHs) that catalyze the cleavage and molecular grafting of xyloglucan chains function in loosening and rearrangement of the cell wall. Gene is expressed in shoot apex region, flower buds, flower stalks and internodes bearing flowers.; xyloglucan endotransglucosylase/hydrolase 9 (XTH9); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: apoplast, cell wall; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Beta-glucanase (InterPro:IPR008264), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 5 (TAIR:AT5G13870.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q39857|xth_soybn : 272.0) Probable xyloglucan endotransglucosylase/hydrolase precursor (EC 2.4.1.207) (Fragment) - Glycine max (Soybean) & (reliability: 582.0) & (original description: no original description)


Gene families : OG_42_0000032 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000032_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00017708-RA
Cluster HCCA clusters: Cluster_292

Target Alias Description ECC score Gene Family Method Actions
A4A49_15625 No alias xyloglucan endotransglucosylasehydrolase 1 0.03 Orthogroups_2024-Update
A4A49_17793 No alias putative xyloglucan endotransglucosylasehydrolase protein 26 0.03 Orthogroups_2024-Update
A4A49_17794 No alias putative xyloglucan endotransglucosylasehydrolase protein 26 0.04 Orthogroups_2024-Update
A4A49_36014 No alias putative xyloglucan endotransglucosylasehydrolase protein 16 0.03 Orthogroups_2024-Update
At1g10550 No alias Probable xyloglucan endotransglucosylase/hydrolase... 0.03 Orthogroups_2024-Update
At3g44990 No alias Xyloglucan endotransglucosylase/hydrolase protein 31... 0.03 Orthogroups_2024-Update
At4g30280 No alias Probable xyloglucan endotransglucosylase/hydrolase... 0.02 Orthogroups_2024-Update
At4g30290 No alias Xyloglucan endotransglucosylase/hydrolase... 0.03 Orthogroups_2024-Update
At4g37800 No alias Probable xyloglucan endotransglucosylase/hydrolase... 0.04 Orthogroups_2024-Update
Bradi1g27867 No alias xyloglucan endotransglucosylase/hydrolase 32 0.02 Orthogroups_2024-Update
Bradi1g33810 No alias Xyloglucan endotransglucosylase/hydrolase family protein 0.05 Orthogroups_2024-Update
Bradi1g44777 No alias xyloglucan endotransglucosylase/hydrolase 1 0.03 Orthogroups_2024-Update
Brara.A00715.1 No alias EC_2.4 glycosyltransferase 0.03 Orthogroups_2024-Update
Brara.E00809.1 No alias xyloglucan endotransglucosylase/hydrolase *(XTH) &... 0.03 Orthogroups_2024-Update
Glyma.05G109600 No alias xyloglucan endotransglucosylase/hydrolase 6 0.03 Orthogroups_2024-Update
Glyma.11G253900 No alias xyloglucan endotransglucosylase/hydrolase 16 0.02 Orthogroups_2024-Update
Glyma.12G178000 No alias xyloglucan endotransglucosylase/hydrolase 32 0.02 Orthogroups_2024-Update
Glyma.13G095000 No alias Xyloglucan endotransglucosylase/hydrolase family protein 0.02 Orthogroups_2024-Update
Glyma.17G064900 No alias Xyloglucan endotransglucosylase/hydrolase family protein 0.02 Orthogroups_2024-Update
Glyma.17G157400 No alias xyloglucan endotransglucosylase/hydrolase 6 0.02 Orthogroups_2024-Update
Glyma.18G165700 No alias xyloglucan endotransglucosylase/hydrolase 2 0.02 Orthogroups_2024-Update
LOC_Os03g01800 No alias glycosyl hydrolases family 16, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os06g48160 No alias glycosyl hydrolases family 16, putative, expressed 0.02 Orthogroups_2024-Update
MA_10430695g0010 No alias (p35694|bru1_soybn : 327.0) Brassinosteroid-regulated... 0.03 Orthogroups_2024-Update
MA_10430703g0010 No alias (p35694|bru1_soybn : 343.0) Brassinosteroid-regulated... 0.04 Orthogroups_2024-Update
MA_10432086g0010 No alias (p35694|bru1_soybn : 353.0) Brassinosteroid-regulated... 0.03 Orthogroups_2024-Update
MA_10432086g0020 No alias (p35694|bru1_soybn : 289.0) Brassinosteroid-regulated... 0.03 Orthogroups_2024-Update
MA_10433908g0010 No alias (at4g03210 : 268.0) encodes a member of xyloglucan... 0.03 Orthogroups_2024-Update
MA_10434153g0020 No alias (q41638|xtha_phaan : 378.0) Xyloglucan... 0.03 Orthogroups_2024-Update
MA_11177g0010 No alias (at5g57550 : 312.0) xyloglucan... 0.04 Orthogroups_2024-Update
MA_15222g0020 No alias (at3g44990 : 243.0) xyloglucan endo-transglycosylase;... 0.04 Orthogroups_2024-Update
MA_39487g0010 No alias (at4g14130 : 363.0) xyloglucan... 0.03 Orthogroups_2024-Update
MA_476450g0010 No alias (at5g65730 : 440.0) xyloglucan... 0.04 Orthogroups_2024-Update
MA_75919g0010 No alias (at2g36870 : 300.0) xyloglucan... 0.03 Orthogroups_2024-Update
MA_848882g0010 No alias (at5g65730 : 338.0) xyloglucan... 0.03 Orthogroups_2024-Update
MA_894023g0010 No alias (at5g13870 : 233.0) EXGT-A4, endoxyloglucan... 0.03 Orthogroups_2024-Update
Mp2g17820.1 No alias Enzyme classification.EC_2 transferases.EC_2.4... 0.02 Orthogroups_2024-Update
Mp2g21490.1 No alias Enzyme classification.EC_2 transferases.EC_2.4... 0.03 Orthogroups_2024-Update
Mp4g01200.1 No alias Enzyme classification.EC_2 transferases.EC_2.4... 0.03 Orthogroups_2024-Update
PSME_00000083-RA No alias (at2g36870 : 334.0) xyloglucan... 0.08 Orthogroups_2024-Update
PSME_00001200-RA No alias (at4g03210 : 352.0) encodes a member of xyloglucan... 0.05 Orthogroups_2024-Update
PSME_00001202-RA No alias (at4g03210 : 351.0) encodes a member of xyloglucan... 0.04 Orthogroups_2024-Update
PSME_00005469-RA No alias (q41638|xtha_phaan : 167.0) Xyloglucan... 0.04 Orthogroups_2024-Update
PSME_00009507-RA No alias (at3g23730 : 294.0) xyloglucan... 0.03 Orthogroups_2024-Update
PSME_00010987-RA No alias (at3g44990 : 278.0) xyloglucan endo-transglycosylase;... 0.05 Orthogroups_2024-Update
PSME_00011921-RA No alias (at4g03210 : 296.0) encodes a member of xyloglucan... 0.03 Orthogroups_2024-Update
PSME_00017521-RA No alias (at4g03210 : 345.0) encodes a member of xyloglucan... 0.03 Orthogroups_2024-Update
PSME_00022999-RA No alias (at5g57530 : 289.0) xyloglucan... 0.03 Orthogroups_2024-Update
PSME_00028627-RA No alias (q41638|xtha_phaan : 479.0) Xyloglucan... 0.03 Orthogroups_2024-Update
PSME_00036332-RA No alias (at2g36870 : 292.0) xyloglucan... 0.04 Orthogroups_2024-Update
PSME_00039728-RA No alias (q39857|xth_soybn : 318.0) Probable xyloglucan... 0.05 Orthogroups_2024-Update
PSME_00043401-RA No alias (at5g13870 : 171.0) EXGT-A4, endoxyloglucan... 0.04 Orthogroups_2024-Update
PSME_00047577-RA No alias (at4g03210 : 346.0) encodes a member of xyloglucan... 0.05 Orthogroups_2024-Update
PSME_00047953-RA No alias (at5g57550 : 312.0) xyloglucan... 0.05 Orthogroups_2024-Update
PSME_00055766-RA No alias (q8lnz5|xthb_phaan : 137.0) Probable xyloglucan... 0.03 Orthogroups_2024-Update
Potri.002G244200 No alias xyloglucan endotransglucosylase/hydrolase 2 0.03 Orthogroups_2024-Update
Pp1s122_57V6 No alias brassinosteroid-regulated protein bru1 0.02 Orthogroups_2024-Update
Pp1s193_16V6 No alias MAC12.33; xyloglucan endotransglycosylase (EXGT-A4)... 0.02 Orthogroups_2024-Update
Pp1s309_41V6 No alias xyloglucan endotransglucosylase hydrolase protein a 0.03 Orthogroups_2024-Update
Seita.2G313800.1 No alias xyloglucan endotransglucosylase/hydrolase *(XTH) &... 0.03 Orthogroups_2024-Update
Seita.8G142000.1 No alias EC_2.4 glycosyltransferase 0.04 Orthogroups_2024-Update
Solyc03g093080 No alias Xyloglucan endotransglucosylase/hydrolase (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Solyc03g093110 No alias xyloglucan endotransglucosylase-hydrolase 0.03 Orthogroups_2024-Update
Solyc03g093120 No alias xyloglucan endotransglucosylase-hydrolase 0.03 Orthogroups_2024-Update
Solyc03g093130 No alias xyloglucan endotransglucosylase-hydrolase 3 0.02 Orthogroups_2024-Update
Solyc07g055990 No alias Xyloglucan endotransglucosylase/hydrolase 7 (AHRD V1... 0.03 Orthogroups_2024-Update
Solyc07g056000 No alias xyloglycan endo-transglycosylase 0.02 Orthogroups_2024-Update
Solyc11g065600 No alias xyloglucan endotransglucosylase-hydrolase 4 0.03 Orthogroups_2024-Update
Sopen03g023900 No alias Glycosyl hydrolases family 16 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA InterProScan predictions
CC GO:0005618 cell wall IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
BP GO:0006073 cellular glucan metabolic process IEA InterProScan predictions
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEA InterProScan predictions
CC GO:0048046 apoplast IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Predicted GO
InterPro domains Description Start Stop
IPR000757 GH16 2 149
IPR010713 XET_C 176 221
No external refs found!