PSME_00017762-RA

Description : (p46297|rs23_fraan : 282.0) 40S ribosomal protein S23 (S12) - Fragaria ananassa (Strawberry) & (at5g02960 : 272.0) Ribosomal protein S12/S23 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome; EXPRESSED IN: guard cell, leaf; CONTAINS InterPro DOMAIN/s: Ribosomal protein S23, eukaryotic/archaeal (InterPro:IPR005680), Ribosomal protein S12/S23 (InterPro:IPR006032), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340); BEST Arabidopsis thaliana protein match is: Ribosomal protein S12/S23 family protein (TAIR:AT3G09680.1); Has 9074 Blast hits to 9071 proteins in 3107 species: Archae - 259; Bacteria - 5125; Metazoa - 487; Fungi - 294; Plants - 977; Viruses - 0; Other Eukaryotes - 1932 (source: NCBI BLink). & (reliability: 544.0) & (original description: no original description)

Gene families : OG_42_0001537 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001537_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00017762-RA
Cluster	HCCA clusters: Cluster_26

Target	Alias	Description	ECC score	Gene Family Method
145246	No alias	Ribosomal protein S12/S23 family protein	0.08	Orthogroups_2024-Update
A4A49_33378	No alias	40s ribosomal protein s23	0.03	Orthogroups_2024-Update
A4A49_59751	No alias	40s ribosomal protein s23	0.04	Orthogroups_2024-Update
Bradi2g22897	No alias	Ribosomal protein S12/S23 family protein	0.05	Orthogroups_2024-Update
Bradi2g54210	No alias	Ribosomal protein S12/S23 family protein	0.06	Orthogroups_2024-Update
Brara.A03520.1	No alias	component *(uS12) of small ribosomal-subunit (SSU) proteome	0.03	Orthogroups_2024-Update
Brara.B00072.1	No alias	component *(uS12) of small ribosomal-subunit (SSU) proteome	0.1	Orthogroups_2024-Update
Brara.C00091.1	No alias	component *(uS12) of small ribosomal-subunit (SSU) proteome	0.03	Orthogroups_2024-Update
Brara.J02847.1	No alias	component *(uS12) of small ribosomal-subunit (SSU) proteome	0.04	Orthogroups_2024-Update
Cre12.g504200	No alias	Ribosomal protein S12/S23 family protein	0.05	Orthogroups_2024-Update
Glyma.03G178000	No alias	Ribosomal protein S12/S23 family protein	0.03	Orthogroups_2024-Update
Glyma.10G049400	No alias	Ribosomal protein S12/S23 family protein	0.06	Orthogroups_2024-Update
Glyma.13G137100	No alias	Ribosomal protein S12/S23 family protein	0.05	Orthogroups_2024-Update
Glyma.19G178800	No alias	Ribosomal protein S12/S23 family protein	0.03	Orthogroups_2024-Update
HORVU1Hr1G071570.1	No alias	component *(uS12) of small ribosomal-subunit (SSU) proteome	0.07	Orthogroups_2024-Update
HORVU3Hr1G087380.1	No alias	component *(uS12) of small ribosomal-subunit (SSU) proteome	0.05	Orthogroups_2024-Update
HORVU5Hr1G066080.1	No alias	component *(uS12) of small ribosomal-subunit (SSU) proteome	0.03	Orthogroups_2024-Update
Kfl00077_0130	kfl00077_0130_v1.1	(p46297\|rs23_fraan : 274.0) 40S ribosomal protein S23...	0.06	Orthogroups_2024-Update
MA_10436470g0020	No alias	(p46297\|rs23_fraan : 282.0) 40S ribosomal protein S23...	0.07	Orthogroups_2024-Update
Potri.008G044400	No alias	Ribosomal protein S12/S23 family protein	0.06	Orthogroups_2024-Update
Pp1s135_33V6	No alias	40s ribosomal protein s23	0.04	Orthogroups_2024-Update
Pp1s264_73V6	No alias	40s ribosomal protein s23	0.04	Orthogroups_2024-Update
Pp1s287_20V6	No alias	40s ribosomal protein s23	0.03	Orthogroups_2024-Update
Pp1s372_2V6	No alias	40s ribosomal protein s23	0.04	Orthogroups_2024-Update
Pp1s61_268V6	No alias	40s ribosomal protein s23	0.03	Orthogroups_2024-Update
Seita.3G213400.1	No alias	component *(uS12) of small ribosomal-subunit (SSU) proteome	0.06	Orthogroups_2024-Update
Seita.5G371300.1	No alias	component *(uS12) of small ribosomal-subunit (SSU) proteome	0.08	Orthogroups_2024-Update
Seita.9G035900.1	No alias	component *(uS12) of small ribosomal-subunit (SSU) proteome	0.03	Orthogroups_2024-Update
Sobic.003G346600.1	No alias	component *(uS12) of small ribosomal-subunit (SSU) proteome	0.08	Orthogroups_2024-Update
Sobic.009G166500.1	No alias	component *(uS12) of small ribosomal-subunit (SSU) proteome	0.07	Orthogroups_2024-Update
Solyc09g007350	No alias	Ribosomal protein S12 (AHRD V3.3 *** A0A059LPB2_9CHLO)	0.09	Orthogroups_2024-Update
Solyc10g086020	No alias	interactor of constitutive active ROPs 3	0.05	Orthogroups_2024-Update
Sopen09g002250	No alias	Ribosomal protein S12/S23	0.09	Orthogroups_2024-Update
Sopen10g033750	No alias	Ribosomal protein S12/S23	0.05	Orthogroups_2024-Update
Sopen10g035390	No alias	Ribosomal protein S12/S23	0.06	Orthogroups_2024-Update
evm.model.contig_4434.4	No alias	(p46297\|rs23_fraan : 218.0) 40S ribosomal protein S23...	0.06	Orthogroups_2024-Update
evm.model.tig00001264.27	No alias	(at5g02960 : 160.0) Ribosomal protein S12/S23 family...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003746	translation elongation factor activity	IEP	Predicted GO
CC	GO:0005622	intracellular	IEP	Predicted GO
CC	GO:0005759	mitochondrial matrix	IEP	Predicted GO
BP	GO:0006364	rRNA processing	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
MF	GO:0008135	translation factor activity, RNA binding	IEP	Predicted GO
BP	GO:0015985	energy coupled proton transport, down electrochemical gradient	IEP	Predicted GO
BP	GO:0015986	ATP synthesis coupled proton transport	IEP	Predicted GO
BP	GO:0016072	rRNA metabolic process	IEP	Predicted GO
MF	GO:0019829	cation-transporting ATPase activity	IEP	Predicted GO
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predicted GO
MF	GO:0022853	active ion transmembrane transporter activity	IEP	Predicted GO
BP	GO:0030163	protein catabolic process	IEP	Predicted GO
CC	GO:0031974	membrane-enclosed lumen	IEP	Predicted GO
BP	GO:0042254	ribosome biogenesis	IEP	Predicted GO
MF	GO:0042393	histone binding	IEP	Predicted GO
MF	GO:0042625	ATPase coupled ion transmembrane transporter activity	IEP	Predicted GO
CC	GO:0043233	organelle lumen	IEP	Predicted GO
BP	GO:0044085	cellular component biogenesis	IEP	Predicted GO
MF	GO:0044769	ATPase activity, coupled to transmembrane movement of ions, rotational mechanism	IEP	Predicted GO
MF	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism	IEP	Predicted GO
CC	GO:0070013	intracellular organelle lumen	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR006032	Ribosomal_S12/S23	31	141

External Links

No external refs found!

PSME_00017762-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation