- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : (at1g25440 : 173.0) B-box type zinc finger protein with CCT domain; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box type zinc finger protein with CCT domain (TAIR:AT1G68520.1); Has 3476 Blast hits to 2333 proteins in 129 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 3380; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink). & (reliability: 346.0) & (original description: no original description)
Gene families : OG_42_0000843 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000843_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Pseudotsuga release: PSME_00017908-RA | |
| Cluster | HCCA clusters: Cluster_108 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| A4A49_08367 | No alias | zinc finger protein constans-like 16 | 0.02 | Orthogroups_2024-Update | |
| At1g07050 | No alias | CCT motif family protein [Source:TAIR;Acc:AT1G07050] | 0.03 | Orthogroups_2024-Update | |
| Bradi1g11310 | No alias | B-box type zinc finger protein with CCT domain | 0.04 | Orthogroups_2024-Update | |
| Bradi1g43990 | No alias | B-box type zinc finger protein with CCT domain | 0.05 | Orthogroups_2024-Update | |
| Brara.C00622.1 | No alias | CMF transcription factor | 0.02 | Orthogroups_2024-Update | |
| Brara.J02021.1 | No alias | CMF transcription factor | 0.04 | Orthogroups_2024-Update | |
| GRMZM2G008482 | No alias | chloroplast import apparatus 2 | 0.02 | Orthogroups_2024-Update | |
| Glyma.19G079600 | No alias | CCT motif family protein | 0.02 | Orthogroups_2024-Update | |
| HORVU4Hr1G007420.1 | No alias | BBX class-III transcription factor | 0.03 | Orthogroups_2024-Update | |
| HORVU7Hr1G074960.2 | No alias | CMF transcription factor | 0.02 | Orthogroups_2024-Update | |
| Potri.015G054600 | No alias | B-box type zinc finger protein with CCT domain | 0.03 | Orthogroups_2024-Update | |
| Sobic.001G118100.1 | No alias | BBX class-III transcription factor | 0.03 | Orthogroups_2024-Update | |
| Sopen02g038060 | No alias | CCT motif | 0.03 | Orthogroups_2024-Update | |
| Sopen04g002270 | No alias | CCT motif | 0.02 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | IEA | InterProScan predictions |
| MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0006534 | cysteine metabolic process | IEP | Predicted GO |
| BP | GO:0006535 | cysteine biosynthetic process from serine | IEP | Predicted GO |
| BP | GO:0006563 | L-serine metabolic process | IEP | Predicted GO |
| MF | GO:0009001 | serine O-acetyltransferase activity | IEP | Predicted GO |
| BP | GO:0009069 | serine family amino acid metabolic process | IEP | Predicted GO |
| BP | GO:0009070 | serine family amino acid biosynthetic process | IEP | Predicted GO |
| MF | GO:0016412 | serine O-acyltransferase activity | IEP | Predicted GO |
| MF | GO:0016413 | O-acetyltransferase activity | IEP | Predicted GO |
| BP | GO:0019344 | cysteine biosynthetic process | IEP | Predicted GO |
| No external refs found! |