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  5. PSME_00017956-RA

PSME_00017956-RA


Description : (at1g47420 : 173.0) succinate dehydrogenase 5 (SDH5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: gamma carbonic anhydrase 2 (TAIR:AT1G47260.1); Has 145 Blast hits to 145 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). & (reliability: 346.0) & (original description: no original description)


Gene families : OG_42_0002304 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002304_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00017956-RA
Cluster HCCA clusters: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
PSME_00011250-RA No alias (at1g47420 : 122.0) succinate dehydrogenase 5 (SDH5);... 0.04 Orthogroups_2024-Update
PSME_00046487-RA No alias (at1g47420 : 161.0) succinate dehydrogenase 5 (SDH5);... 0.05 Orthogroups_2024-Update
PSME_00048615-RA No alias (at1g47420 : 97.4) succinate dehydrogenase 5 (SDH5);... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
BP GO:0006099 tricarboxylic acid cycle IEP Predicted GO
BP GO:0006101 citrate metabolic process IEP Predicted GO
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP Predicted GO
BP GO:0015977 carbon fixation IEP Predicted GO
BP GO:0016999 antibiotic metabolic process IEP Predicted GO
MF GO:0046983 protein dimerization activity IEP Predicted GO
BP GO:0072350 tricarboxylic acid metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR025397 DUF4370 3 172
No external refs found!