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  5. PSME_00018173-RA

PSME_00018173-RA


Description : (at3g23330 : 494.0) Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: mitochondrial editing factor 22 (TAIR:AT3G12770.1); Has 38045 Blast hits to 13879 proteins in 261 species: Archae - 0; Bacteria - 10; Metazoa - 50; Fungi - 109; Plants - 37267; Viruses - 0; Other Eukaryotes - 609 (source: NCBI BLink). & (q76c99|rf1_orysa : 101.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 904.0) & (original description: no original description)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00018173-RA
Cluster HCCA clusters: Cluster_142

Target Alias Description ECC score Gene Family Method Actions
102435 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
119022 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
124576 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Bradi1g51700 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Orthogroups_2024-Update
Bradi2g45250 No alias mitochondrial RNAediting factor 1 0.04 Orthogroups_2024-Update
GRMZM2G161368 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Glyma.04G129100 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
HORVU3Hr1G079860.2 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os09g38310 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
MA_136188g0010 No alias (at1g11290 : 582.0) Pentatricopeptide Repeat Protein... 0.07 Orthogroups_2024-Update
MA_49545g0010 No alias (at1g11290 : 523.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
MA_66417g0010 No alias (at2g22070 : 634.0) pentatricopeptide (PPR)... 0.04 Orthogroups_2024-Update
Potri.004G237000 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Sobic.003G336400.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.003G433600.1 No alias RNA editing factor *(OTP72) 0.03 Orthogroups_2024-Update
Sobic.009G250700.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.010G258600.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Solyc01g112200 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.02 Orthogroups_2024-Update
Solyc02g065030 No alias No description available 0.02 Orthogroups_2024-Update
Sopen09g027460 No alias PPR repeat 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR032867 DYW_dom 349 473
IPR002885 Pentatricopeptide_repeat 250 274
IPR002885 Pentatricopeptide_repeat 50 74
IPR002885 Pentatricopeptide_repeat 175 224
IPR002885 Pentatricopeptide_repeat 75 123
No external refs found!