PSME_00018264-RA

Description : (original description: no original description)

Gene families : OG_42_0000689 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000689_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00018264-RA
Cluster	HCCA clusters: Cluster_172

Target	Alias	Description	ECC score	Gene Family Method
GRMZM2G080274	No alias	histone H1-3	0.03	Orthogroups_2024-Update
GRMZM2G121221	No alias	winged-helix DNA-binding transcription factor family protein	0.05	Orthogroups_2024-Update
GRMZM2G401308	No alias	winged-helix DNA-binding transcription factor family protein	0.04	Orthogroups_2024-Update
LOC_Os07g08710	No alias	AT hook-containing DNA-binding protein, putative, expressed	0.02	Orthogroups_2024-Update
MA_10436125g0020	No alias	no hits & (original description: no original description)	0.04	Orthogroups_2024-Update
MA_500183g0010	No alias	(original description: no original description)	0.02	Orthogroups_2024-Update
MA_5243726g0010	No alias	(p27806\|h1_wheat : 91.3) Histone H1 - Triticum aestivum...	0.03	Orthogroups_2024-Update
MA_6409g0010	No alias	(original description: no original description)	0.02	Orthogroups_2024-Update
PSME_00009292-RA	No alias	(p23444\|h1_maize : 104.0) Histone H1 - Zea mays (Maize)...	0.03	Orthogroups_2024-Update
Sopen09g032300	No alias	linker histone H1 and H5 family	0.03	Orthogroups_2024-Update
evm.model.contig_2062.24	No alias	no hits & (original description: no original description)	0.01	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEA	InterProScan predictions
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	InterProScan predictions
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006334	nucleosome assembly	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
BP	GO:0034622	cellular protein-containing complex assembly	None	Extended
BP	GO:0034728	nucleosome organization	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043933	protein-containing complex subunit organization	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044427	chromosomal part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
CC	GO:0044815	DNA packaging complex	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0065004	protein-DNA complex assembly	None	Extended
BP	GO:0071824	protein-DNA complex subunit organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR005818	Histone_H1/H5_H15	1	63

External Links

No external refs found!

PSME_00018264-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation